Plasmid CP154280.1

Sequence

Nucleotide Information

Accession CP154280.1
Description Staphylococcus aureus strain BSN52-3 plasmid pSAP046A, complete sequence
Source insd
Topology circular
Length 27067 bp
GC Content 0.31 %
Created at NCBI May 6, 2024



Assembly

Genome Data Information

Accession GCA_039525315.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 41039746

PLASMID INFORMATION
Genotype ST8-MRSA-IVa CC8

GEOGRAPHICAL INFORMATION
Original Query 42.33N;83.05W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.33/-83.05
Address Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 46
Host-associated Sex male

DISEASE
Original Query Vertebral osteomyelitis,chronic disease
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
  • Osteomyelitis (DOID:1019 )
    • A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
    • Has_material_basis_in: ['infection located_in bone or located_in bone marrow']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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CP150106.1 See Comparison
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CP030672.1 See Comparison
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CP030700.1 See Comparison
CP030694.1 See Comparison
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CP030427.1 See Comparison
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CP030511.1 See Comparison
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CP030385.1 See Comparison
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CP150106.1 See Comparison
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NZ_CP002149.1 See Comparison
CP051998.1 See Comparison
CP051977.1 See Comparison
CP051911.1 See Comparison
CP049559.1 See Comparison
CP049557.1 See Comparison
CP049507.1 See Comparison
CP052027.1 See Comparison
CP052011.1 See Comparison
CP049426.1 See Comparison
CP051900.1 See Comparison
CP049415.1 See Comparison
CP049492.1 See Comparison
CP049585.1 See Comparison
CP049407.1 See Comparison
CP049402.1 See Comparison
CP049398.1 See Comparison
CP049576.1 See Comparison
CP049385.1 See Comparison
CP049451.1 See Comparison
CP049446.1 See Comparison
CP049382.1 See Comparison
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CP049378.1 See Comparison
CP049433.1 See Comparison
NZ_CP113028.1 See Comparison
NZ_CP062325.1 See Comparison
NZ_CP103861.1 See Comparison
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NZ_CP062367.1 See Comparison
NZ_CP062315.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP014445.1 See Comparison
CP083745.1 See Comparison
NZ_CP081355.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014408.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP014416.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP009425.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP007177.1 See Comparison
NC_013289.1 See Comparison
NC_019150.1 See Comparison
NC_018974.1 See Comparison
NC_018963.1 See Comparison
NC_018961.1 See Comparison
NC_018959.1 See Comparison
NC_018957.1 See Comparison
NC_018956.1 See Comparison
CP030587.1 See Comparison
NC_013298.1 See Comparison
NC_013294.1 See Comparison
NC_010063.1 See Comparison
CP030707.1 See Comparison
CP030700.1 See Comparison
CP030633.1 See Comparison
CP030667.1 See Comparison
CP030694.1 See Comparison
CP030511.1 See Comparison
CP030427.1 See Comparison
CP030660.1 See Comparison
CP030672.1 See Comparison
CP030644.1 See Comparison
CP030513.1 See Comparison
CP030597.1 See Comparison
CP030629.1 See Comparison
CP030385.1 See Comparison
CP030494.1 See Comparison
CP030444.1 See Comparison
CP030414.1 See Comparison
CP030446.1 See Comparison
CP030416.1 See Comparison
CP030560.1 See Comparison
CP030563.1 See Comparison
NZ_LR130519.1 See Comparison
NZ_CP031889.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP012118.2 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP029665.1 See Comparison
NZ_CP029666.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP152122.1 See Comparison
NZ_CP016862.1 See Comparison
CP156704.1 See Comparison
NZ_CP152411.1 See Comparison
CP151826.1 See Comparison
CP155821.1 See Comparison
CP150830.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
CP152323.1 See Comparison
CP151890.1 See Comparison
NZ_CP151124.1 See Comparison
CP154289.1 See Comparison
CP154283.1 See Comparison
CP150837.1 See Comparison
NZ_CP149457.1 See Comparison
NZ_CP147970.1 See Comparison
NZ_CP149809.1 See Comparison
NZ_CP151143.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP148077.1 See Comparison
NZ_CP148080.1 See Comparison
NZ_CP002149.1 See Comparison
CP150106.1 See Comparison
CP150112.1 See Comparison
NZ_CP147692.1 See Comparison
CP150114.1 See Comparison
CP150101.1 See Comparison
CP049507.1 See Comparison
CP051977.1 See Comparison
CP052027.1 See Comparison
CP052011.1 See Comparison
CP051998.1 See Comparison
CP049415.1 See Comparison
CP049407.1 See Comparison
CP049402.1 See Comparison
CP049398.1 See Comparison
CP049492.1 See Comparison
CP049385.1 See Comparison
CP049382.1 See Comparison
CP049378.1 See Comparison
CP051911.1 See Comparison
CP049451.1 See Comparison
CP051900.1 See Comparison
CP049585.1 See Comparison
CP049446.1 See Comparison
CP049576.1 See Comparison
CP049433.1 See Comparison
CP049559.1 See Comparison
CP049557.1 See Comparison
CP049426.1 See Comparison
NZ_CP062325.1 See Comparison
NZ_CP117205.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
NZ_CP062315.1 See Comparison
NZ_CP113028.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014445.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
CP083745.1 See Comparison
NZ_CP081355.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014408.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014416.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP007177.1 See Comparison
NZ_CP009425.1 See Comparison
CP030667.1 See Comparison
NC_019150.1 See Comparison
NC_010063.1 See Comparison
NC_018974.1 See Comparison
NC_018963.1 See Comparison
NC_018961.1 See Comparison
NC_018959.1 See Comparison
NC_018957.1 See Comparison
NC_018956.1 See Comparison
NC_013298.1 See Comparison
NC_013294.1 See Comparison
NC_013289.1 See Comparison
CP030694.1 See Comparison
CP030660.1 See Comparison
CP030707.1 See Comparison
CP030633.1 See Comparison
CP030427.1 See Comparison
CP030672.1 See Comparison
CP030700.1 See Comparison
CP030644.1 See Comparison
CP030597.1 See Comparison
CP030385.1 See Comparison
CP030629.1 See Comparison
CP030560.1 See Comparison
CP030414.1 See Comparison
CP030416.1 See Comparison
CP030511.1 See Comparison
CP030513.1 See Comparison
CP030563.1 See Comparison
CP030494.1 See Comparison
CP030587.1 See Comparison
CP030444.1 See Comparison
NZ_CP031889.1 See Comparison
CP030446.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_LR130519.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP152122.1 See Comparison
NZ_CP029665.1 See Comparison
NZ_CP029666.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
CP156704.1 See Comparison
NZ_CP012118.2 See Comparison
NZ_CP152411.1 See Comparison
CP150830.1 See Comparison
CP154289.1 See Comparison
CP154283.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
CP152323.1 See Comparison
CP151890.1 See Comparison
CP151826.1 See Comparison
CP150837.1 See Comparison
NZ_CP149457.1 See Comparison
NZ_CP147970.1 See Comparison
NZ_CP149809.1 See Comparison
NZ_CP151143.1 See Comparison
NZ_CP151124.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP148077.1 See Comparison
NZ_CP148080.1 See Comparison
NZ_CP002149.1 See Comparison
CP150112.1 See Comparison
NZ_CP147692.1 See Comparison
CP150114.1 See Comparison
CP150101.1 See Comparison
CP150106.1 See Comparison
CP051977.1 See Comparison
CP051911.1 See Comparison
CP052027.1 See Comparison
CP052011.1 See Comparison
CP051900.1 See Comparison
CP051998.1 See Comparison
CP049585.1 See Comparison
CP049507.1 See Comparison
CP049576.1 See Comparison
CP049407.1 See Comparison
CP049402.1 See Comparison
CP049559.1 See Comparison
CP049398.1 See Comparison
CP049492.1 See Comparison
CP049557.1 See Comparison
NZ_CP117205.1 See Comparison
CP049451.1 See Comparison
CP049446.1 See Comparison
CP049433.1 See Comparison
CP049426.1 See Comparison
CP049415.1 See Comparison
CP049385.1 See Comparison
CP049382.1 See Comparison
CP049378.1 See Comparison
NZ_CP113028.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2