Plasmid NZ_AP027200.1

Sequence

Nucleotide Information

Accession NZ_AP027200.1
Description Escherichia coli strain 02E060 plasmid pO26_02E060_3, complete sequence
Source refseq
Topology circular
Length 6715 bp
GC Content 0.46 %
Created at NCBI May 11, 2023



Assembly

Genome Data Information

Accession GCF_027925845.1
Assembly Coverage 235


Biosample

Curated Collection Information

Accession 32227900

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query Japan,Fukuoka
Original Query Type name
Coordinates (Lat/Lon) 33.63/130.62
Address Japan,Fukuoka

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP027169.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
AP026749.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_AP024118.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
AP026749.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027174.1 See Comparison
CP056958.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
NZ_CP101296.1 See Comparison
AP026749.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_CP058686.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_AP024118.1 See Comparison
AP026749.1 See Comparison
NZ_CP101296.1 See Comparison
CP063714.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027174.1 See Comparison
CP056958.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP058686.1 See Comparison
AP026749.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
CP056958.1 See Comparison
NZ_CP101296.1 See Comparison
AP026749.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP031924.1 See Comparison


Identical Plasmids

100% Sequence Identity




Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore