Plasmid AP026749.1

Sequence

Nucleotide Information

Accession AP026749.1
Description Escherichia coli PV06-71 plasmid pO165_PV06-71_3 O165:H25 DNA, complete sequence
Source insd
Topology circular
Length 6715 bp
GC Content 0.46 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCA_026001465.1
Assembly Coverage 63


Biosample

Curated Collection Information
Accession 30523742

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diarrhea/bloody diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
NZ_CP101296.1 See Comparison
CP056958.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP101296.1 See Comparison
AP026749.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP058686.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_CP058686.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP031924.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhindVMcopy
PGAGhindVRPcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGmbeAcopy
PGAGmbeCcopy
PGAGRNA I inhibition modulator protein Romcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 11 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019076_00002MOBP38525396minus92.529990907
relaxaseNC_017321_00002MOBP53925742minus93.162991.96e-64217
oriTNZ_CP016585MOBP60436128minus97.6741006.569999999999999e-34148
repliconCP041342_00001rep_cluster_235061476694plus95.455990874
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2