Plasmid NZ_AP024118.1

Sequence

Nucleotide Information

Accession NZ_AP024118.1
Description Escherichia coli strain JML285 plasmid JML285_P4, complete sequence
Source refseq
Topology circular
Length 6715 bp
GC Content 0.46 %
Created at NCBI Aug. 18, 2021



Assembly

Genome Data Information

Accession GCF_005389605.2
Assembly Coverage 40


Biosample

Curated Collection Information
Accession 7832167

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
CP056958.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
NZ_AP027169.1 See Comparison
AP026749.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
CP063714.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
NZ_CP058686.1 See Comparison
AP026749.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
CP056958.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
AP026749.1 See Comparison
CP056958.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_OY754855.1 See Comparison
AP026749.1 See Comparison
NZ_CP058686.1 See Comparison
CP063714.1 See Comparison
NZ_OY754855.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_CP101296.1 See Comparison
AP026749.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
NZ_CP058686.1 See Comparison
NZ_AP024118.1 See Comparison
NZ_CP101296.1 See Comparison
NZ_CP058686.1 See Comparison
NZ_AP027169.1 See Comparison
NZ_AP027200.1 See Comparison
NZ_AP027174.1 See Comparison
NZ_CP031924.1 See Comparison
NZ_OY754855.1 See Comparison
CP056958.1 See Comparison
CP063714.1 See Comparison
AP026749.1 See Comparison
NZ_CP101296.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore