Plasmid CP137938.1

Sequence

Nucleotide Information

Accession CP137938.1
Description Escherichia coli strain 2023CK-00004 plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 6200 bp
GC Content 0.53 %
Created at NCBI Nov. 6, 2023



Assembly

Genome Data Information

Accession GCA_028049085.3
Assembly Coverage 148


Biosample

Curated Collection Information
Accession 32801356

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,other
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP103749.1 See Comparison
NZ_CP103648.1 See Comparison
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NZ_CP060896.1 See Comparison
NZ_CP059123.1 See Comparison
NZ_CP054162.1 See Comparison
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NZ_CP079628.1 See Comparison
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NZ_CP072861.1 See Comparison
NZ_CP074125.1 See Comparison
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NC_011795.1 See Comparison
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NZ_LT985316.1 See Comparison
NZ_CP073965.1 See Comparison
NZ_CP069546.1 See Comparison
NZ_CP116991.1 See Comparison
NZ_CP117051.1 See Comparison
NZ_CP117047.1 See Comparison
NZ_CP116097.1 See Comparison
NZ_CP103518.1 See Comparison
NZ_CP103749.1 See Comparison
NZ_CP103648.1 See Comparison
NZ_CP103542.1 See Comparison
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NZ_CP116190.1 See Comparison
CP114349.1 See Comparison
AP026492.1 See Comparison
NZ_MW133277.1 See Comparison
NZ_CP101297.1 See Comparison
NZ_MW133276.1 See Comparison
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NZ_CP091694.1 See Comparison
NZ_CP060943.1 See Comparison
NZ_CP072861.1 See Comparison
CP083491.1 See Comparison
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NZ_CP054162.1 See Comparison
NZ_CP059128.1 See Comparison
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CP125017.1 See Comparison
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CP125046.1 See Comparison
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NZ_CP142947.1 See Comparison
CP056449.1 See Comparison
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CP052448.1 See Comparison
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NZ_LT985316.1 See Comparison
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NZ_CP117051.1 See Comparison
NZ_CP117047.1 See Comparison
NZ_CP116190.1 See Comparison
NZ_CP116097.1 See Comparison
CP114349.1 See Comparison
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NZ_CP103749.1 See Comparison
NZ_CP103648.1 See Comparison
NZ_CP103542.1 See Comparison
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NZ_CP073965.1 See Comparison
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NZ_MW133276.1 See Comparison
NZ_MW133275.1 See Comparison
NZ_CP091694.1 See Comparison
NZ_CP060943.1 See Comparison
NZ_CP060991.1 See Comparison
NZ_CP060896.1 See Comparison
NZ_CP054162.1 See Comparison
NZ_CP059123.1 See Comparison
CP083491.1 See Comparison
NZ_CP079633.1 See Comparison
NZ_CP079628.1 See Comparison
NZ_CP059128.1 See Comparison
NZ_CP072861.1 See Comparison
NZ_CP068045.1 See Comparison
NZ_CP074125.1 See Comparison
NZ_CP067253.1 See Comparison
NC_017658.1 See Comparison
NZ_CP006639.1 See Comparison
NC_019060.1 See Comparison
NC_019040.1 See Comparison
NC_017329.1 See Comparison
CP125063.1 See Comparison
NC_011795.1 See Comparison
NC_011602.1 See Comparison
NC_009789.1 See Comparison
NC_008597.1 See Comparison
NZ_CP026572.2 See Comparison
NZ_CP029120.1 See Comparison
NC_005324.1 See Comparison
NZ_CP135695.1 See Comparison
NZ_OR237798.1 See Comparison
NZ_CP107130.1 See Comparison
NZ_CP128944.1 See Comparison
CP125023.1 See Comparison
CP125017.1 See Comparison
CP125041.1 See Comparison
CP125046.1 See Comparison
CP124972.1 See Comparison
NZ_CP142947.1 See Comparison
NZ_CP116998.1 See Comparison
NZ_AP027175.1 See Comparison
CP054338.1 See Comparison
NZ_CP039841.1 See Comparison
CP056449.1 See Comparison
CP052406.1 See Comparison
NZ_CP038297.1 See Comparison
NZ_KX291024.1 See Comparison
CP052448.1 See Comparison
NZ_LT985314.1 See Comparison
CP052319.1 See Comparison
NZ_CP048313.1 See Comparison
NZ_LT985316.1 See Comparison
NZ_OP378615.1 See Comparison
NZ_CP069546.1 See Comparison
NZ_CP116991.1 See Comparison
NZ_CP117051.1 See Comparison
NZ_CP117047.1 See Comparison
NZ_CP116190.1 See Comparison
NZ_CP116097.1 See Comparison
CP114349.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore