Plasmid NC_017329.1

Sequence

Nucleotide Information

Accession	NC_017329.1
Description	Shigella flexneri 2002017 plasmid pSFxv_3, complete sequence
Source	refseq
Topology	circular
Length	6200 bp
GC Content	0.53 %
Created at NCBI	April 18, 2012

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella flexneri 2002017 (591020)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_flexneri (623)
Strain	Shigella_flexneri_2002017 (591020)

Assembly

Genome Data Information

Accession	GCF_000022245.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	2603122

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP091694.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP074125.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP006639.1	See Comparison
NC_019060.1	See Comparison
NC_017658.1	See Comparison
CP137938.1	See Comparison
NZ_CP135695.1	See Comparison
NZ_OR237798.1	See Comparison
CP125041.1	See Comparison
CP124972.1	See Comparison
NZ_CP142947.1	See Comparison
NZ_CP128944.1	See Comparison
CP056449.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_CP039841.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP116097.1	See Comparison
NZ_CP103749.1	See Comparison
AP026492.1	See Comparison
NZ_KX291024.1	See Comparison
NZ_CP038297.1	See Comparison
CP052448.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP073965.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_CP079628.1	See Comparison
NC_017658.1	See Comparison
NZ_CP074125.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP006639.1	See Comparison
NZ_CP068045.1	See Comparison
CP137938.1	See Comparison
NC_019060.1	See Comparison
NZ_CP135695.1	See Comparison
NZ_CP128944.1	See Comparison
NZ_OR237798.1	See Comparison
NZ_KX291024.1	See Comparison
CP125041.1	See Comparison
CP124972.1	See Comparison
NZ_CP142947.1	See Comparison
NZ_CP039841.1	See Comparison
CP056449.1	See Comparison
NZ_CP038297.1	See Comparison
CP052448.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_CP116097.1	See Comparison
AP026492.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_CP073965.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_CP074125.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP006639.1	See Comparison
CP137938.1	See Comparison
NC_019060.1	See Comparison
NC_017658.1	See Comparison
CP125041.1	See Comparison
NZ_CP135695.1	See Comparison
NZ_OR237798.1	See Comparison
NZ_CP128944.1	See Comparison
CP124972.1	See Comparison
CP056449.1	See Comparison
NZ_CP142947.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_KX291024.1	See Comparison
NZ_CP039841.1	See Comparison
NZ_CP038297.1	See Comparison
CP052448.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_CP116097.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP073965.1	See Comparison
NZ_CP101297.1	See Comparison
AP026492.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP074125.1	See Comparison
NC_017658.1	See Comparison
NC_019060.1	See Comparison
NZ_CP006639.1	See Comparison
NC_017329.1	See Comparison
NZ_CP135695.1	See Comparison
CP137938.1	See Comparison
NZ_OR237798.1	See Comparison
NZ_CP128944.1	See Comparison
NZ_CP039841.1	See Comparison
CP056449.1	See Comparison
CP125041.1	See Comparison
CP124972.1	See Comparison
NZ_CP142947.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP038297.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_KX291024.1	See Comparison
CP052448.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP116097.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_CP073965.1	See Comparison
AP026492.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP074125.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
CP125041.1	See Comparison
NC_019060.1	See Comparison
NC_017658.1	See Comparison
CP137938.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP006639.1	See Comparison
NZ_CP135695.1	See Comparison
NZ_OR237798.1	See Comparison
NZ_CP128944.1	See Comparison
CP124972.1	See Comparison
NZ_CP142947.1	See Comparison
CP056449.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP039841.1	See Comparison
NZ_CP038297.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_CP073965.1	See Comparison
AP026492.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_KX291024.1	See Comparison
CP052448.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP116097.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP074125.1	See Comparison
NC_019060.1	See Comparison
NZ_CP006639.1	See Comparison
NC_017658.1	See Comparison
CP137938.1	See Comparison
CP125041.1	See Comparison
NZ_CP135695.1	See Comparison
NZ_OR237798.1	See Comparison
NZ_CP128944.1	See Comparison
CP124972.1	See Comparison
NZ_CP142947.1	See Comparison
CP056449.1	See Comparison
CP052448.1	See Comparison
NZ_CP039841.1	See Comparison
NZ_KX291024.1	See Comparison
NZ_CP038297.1	See Comparison
AP026492.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP116097.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_CP073965.1	See Comparison
NZ_CP091694.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133275.1	See Comparison
NZ_CP074125.1	See Comparison
NZ_CP079633.1	See Comparison
NZ_CP079628.1	See Comparison
NZ_CP054162.1	See Comparison
NZ_CP068045.1	See Comparison
NZ_CP067253.1	See Comparison
NZ_CP006639.1	See Comparison
NZ_CP135695.1	See Comparison
NC_019060.1	See Comparison
NC_017658.1	See Comparison
CP137938.1	See Comparison
NZ_OR237798.1	See Comparison
CP125041.1	See Comparison
NZ_CP128944.1	See Comparison
CP124972.1	See Comparison
NZ_CP039841.1	See Comparison
NZ_CP142947.1	See Comparison
CP056449.1	See Comparison
CP052448.1	See Comparison
NZ_KX291024.1	See Comparison
NZ_CP038297.1	See Comparison
NZ_CP103749.1	See Comparison
NZ_LT985316.1	See Comparison
NZ_CP069546.1	See Comparison
NZ_CP116190.1	See Comparison
NZ_CP116097.1	See Comparison
AP026492.1	See Comparison
NZ_CP073965.1	See Comparison
NZ_CP101297.1	See Comparison
NZ_MW133276.1	See Comparison
NZ_MW133277.1	See Comparison
NZ_MW133275.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2