Plasmid CP119185.1

Sequence

Nucleotide Information

Accession CP119185.1
Description Klebsiella pneumoniae strain SC-KP169 plasmid pSC-KP169-2, complete sequence
Source insd
Topology circular
Length 238683 bp
GC Content 0.52 %
Created at NCBI March 13, 2023



Assembly

Genome Data Information

Accession GCA_029168275.1
Assembly Coverage 177


Biosample

Curated Collection Information
Accession 33560690

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.00254450N;120.21938242E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.00/120.22
Address National Cheng Kung University Hospital, 138, Shengli Road, Ren'ai Village, North District, Sanfenzi, Tainan, 704, Taiwan

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW848970.1 See Comparison
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CP094884.1 See Comparison
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NZ_CP086465.1 See Comparison
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NZ_CP082043.1 See Comparison
NZ_CP073628.1 See Comparison
CP137924.1 See Comparison
NZ_CP133742.1 See Comparison
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NZ_CP110144.1 See Comparison
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NZ_CP141555.1 See Comparison
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NZ_CP141580.1 See Comparison
CP052499.1 See Comparison
NZ_CP121134.1 See Comparison
CP052243.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP103730.1 See Comparison
NZ_OP378652.1 See Comparison
OX030699.1 See Comparison
OX030710.1 See Comparison
OX030720.1 See Comparison
OW969841.1 See Comparison
NZ_CP067371.1 See Comparison
OW968366.1 See Comparison
OW968217.1 See Comparison
OW848970.1 See Comparison
OW849406.1 See Comparison
CP094886.1 See Comparison
CP094884.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP082043.1 See Comparison
NZ_CP133742.1 See Comparison
CP137924.1 See Comparison
NZ_CP110144.1 See Comparison
CP155720.1 See Comparison
NZ_CP141555.1 See Comparison
NZ_CP131947.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison
CP052243.1 See Comparison
CP052499.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_OP378652.1 See Comparison
NZ_CP067371.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
OX030720.1 See Comparison
OX030710.1 See Comparison
OW968366.1 See Comparison
OW969841.1 See Comparison
CP094886.1 See Comparison
OW848970.1 See Comparison
OW849406.1 See Comparison
OW968217.1 See Comparison
CP094884.1 See Comparison
CP137924.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
NZ_CP082043.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP110144.1 See Comparison
NZ_CP133742.1 See Comparison
NZ_CP131947.1 See Comparison
CP155720.1 See Comparison
CP052243.1 See Comparison
CP052499.1 See Comparison
NZ_CP141555.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison
CP119185.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
OX030720.1 See Comparison
NZ_OP378652.1 See Comparison
NZ_CP103730.1 See Comparison
OX030710.1 See Comparison
NZ_CP067371.1 See Comparison
OX030699.1 See Comparison
OW969841.1 See Comparison
OW968217.1 See Comparison
OW968366.1 See Comparison
OW848970.1 See Comparison
NZ_CP086459.1 See Comparison
OW849406.1 See Comparison
CP094886.1 See Comparison
CP094884.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP110144.1 See Comparison
NZ_CP086468.1 See Comparison
CP137924.1 See Comparison
NZ_CP133742.1 See Comparison
NZ_CP131947.1 See Comparison
NZ_CP082043.1 See Comparison
NZ_CP073628.1 See Comparison
CP155720.1 See Comparison
OW968217.1 See Comparison
CP052243.1 See Comparison
OW968366.1 See Comparison
NZ_CP141555.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison
CP052499.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_OP378652.1 See Comparison
NZ_CP103730.1 See Comparison
OX030699.1 See Comparison
OX030720.1 See Comparison
OX030710.1 See Comparison
NZ_CP067371.1 See Comparison
OW969841.1 See Comparison
CP094886.1 See Comparison
OW848970.1 See Comparison
OW849406.1 See Comparison
CP094884.1 See Comparison
NZ_CP082043.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP131947.1 See Comparison
NZ_CP073628.1 See Comparison
CP137924.1 See Comparison
NZ_CP133742.1 See Comparison
NZ_CP141555.1 See Comparison
CP155720.1 See Comparison
NZ_CP110144.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison
CP137924.1 See Comparison
CP052499.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_OP378652.1 See Comparison
OX030699.1 See Comparison
OW968217.1 See Comparison
OW849406.1 See Comparison
CP094886.1 See Comparison
CP094884.1 See Comparison
NZ_CP086465.1 See Comparison
NZ_CP086468.1 See Comparison
CP052243.1 See Comparison
NZ_CP103730.1 See Comparison
OX030720.1 See Comparison
OX030710.1 See Comparison
NZ_CP067371.1 See Comparison
OW969841.1 See Comparison
OW968366.1 See Comparison
OW848970.1 See Comparison
NZ_CP086459.1 See Comparison
NZ_CP082043.1 See Comparison
NZ_CP073628.1 See Comparison
NZ_CP133742.1 See Comparison
NZ_CP103730.1 See Comparison
NZ_CP141555.1 See Comparison
NZ_CP141566.1 See Comparison
NZ_CP141580.1 See Comparison
CP052243.1 See Comparison
NZ_CP131947.1 See Comparison
NZ_CP110144.1 See Comparison
CP155720.1 See Comparison
CP052499.1 See Comparison
NZ_CP121134.1 See Comparison
NZ_CP121132.1 See Comparison
NZ_CP121146.1 See Comparison
NZ_CP121138.1 See Comparison
NZ_CP121136.1 See Comparison
NZ_CP121128.1 See Comparison
NZ_CP121144.1 See Comparison
NZ_CP121142.1 See Comparison
NZ_CP121130.1 See Comparison
NZ_CP089885.1 See Comparison
NZ_OP378652.1 See Comparison
OX030699.1 See Comparison
OX030710.1 See Comparison
OX030720.1 See Comparison
NZ_CP067371.1 See Comparison
OW969841.1 See Comparison
OW968366.1 See Comparison
OW968217.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore