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v. 2024_05_31_v2
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Typing
Plasmid CP058049.1
Sequence
Nucleotide Information
Accession
CP058049.1
Description
Escherichia coli strain RHB03-C05 plasmid pRHB03-C05_4, complete sequence
Source
insd
Topology
circular
Length
8136 bp
GC Content
0.43 %
Created at NCBI
Aug. 7, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_014109005.1
Assembly Coverage
91.7572
Biosample
Curated Collection Information
Accession
15147975
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Pooled pig faecal samples collected from floor of farm
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Sus scrofa (
9823
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP058051.1
CP058050.1
CP058048.1
CP058047.1
Similar Plasmids
based on Mash distance
CP058038.1
See Comparison
CP057393.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP058043.1
See Comparison
CP058055.1
See Comparison
CP099145.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP099145.1
See Comparison
CP058043.1
See Comparison
CP058055.1
See Comparison
CP058038.1
See Comparison
CP057393.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP058038.1
See Comparison
CP057393.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP058038.1
See Comparison
CP058043.1
See Comparison
CP058055.1
See Comparison
CP099145.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP057393.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP057393.1
See Comparison
CP099145.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP058043.1
See Comparison
CP058055.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP058038.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP099145.1
See Comparison
CP058043.1
See Comparison
CP058055.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP058038.1
See Comparison
CP057393.1
See Comparison
CP057387.1
See Comparison
CP057005.1
See Comparison
CP057000.1
See Comparison
CP056994.1
See Comparison
CP099145.1
See Comparison
CP099150.1
See Comparison
CP099289.1
See Comparison
CP058043.1
See Comparison
CP058049.1
See Comparison
CP058055.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore