Plasmid CP085738.1

Sequence

Nucleotide Information

Accession CP085738.1
Description Citrobacter freundii strain 52323CZ plasmid p52323CZ_1, complete sequence
Source insd
Topology circular
Length 4938 bp
GC Content 0.55 %
Created at NCBI Nov. 1, 2021



Biosample

Curated Collection Information
Accession 22377420

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.07N;14.43E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.07/14.43
Address Legerova, New Town, Prague, obvod Praha 2, Prague, 121 32, Czechia

ECOSYSTEM
Original Query Homo sapiens,rectum
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query non-hodgkin lymfoma
DOID/SYMP
  • Nonhodgkin lymphoma (DOID:0060060 )
    • A lymphoma that is characterized as any kind of lymphoma except Hodgkin's lymphoma.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NC_021293.2 See Comparison
NZ_MT560068.1 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP021978.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP115694.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP113785.1 See Comparison
NZ_CP096193.1 See Comparison
OW969706.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
OW849096.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_CP042538.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_MT560068.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP021978.1 See Comparison
OW849096.1 See Comparison
NZ_CP115694.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP113785.1 See Comparison
OW969706.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP096193.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042569.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_MT560068.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_AP022060.1 See Comparison
NC_021293.2 See Comparison
NZ_AP021978.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP113785.1 See Comparison
NZ_CP115694.1 See Comparison
OW969706.1 See Comparison
OW849323.1 See Comparison
OW849506.1 See Comparison
NZ_CP096193.1 See Comparison
OW849096.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP083712.1 See Comparison
CP085738.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_MT560068.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP042569.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP021978.1 See Comparison
NZ_CP113785.1 See Comparison
NZ_CP115694.1 See Comparison
NZ_CP103671.1 See Comparison
OW969706.1 See Comparison
NZ_CP010364.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
OW849096.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP096193.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP042569.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_MT560068.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_CP115694.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP021978.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP113785.1 See Comparison
NZ_CP073047.1 See Comparison
OW969706.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
OW849096.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP096193.1 See Comparison
NZ_CP083848.1 See Comparison
AP028568.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
AP028552.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_MT560068.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP021978.1 See Comparison
NZ_CP099324.1 See Comparison
NZ_CP113785.1 See Comparison
NZ_CP115694.1 See Comparison
OW969706.1 See Comparison
NZ_CP103671.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
OW849096.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP096193.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP042543.1 See Comparison
AP028552.1 See Comparison
AP028568.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore