Plasmid NZ_MT560068.1

Sequence

Nucleotide Information

Accession NZ_MT560068.1
Description Klebsiella pneumoniae strain RIVM_C014947 plasmid pRIVM_C014947_5, complete sequence
Source refseq
Topology circular
Length 4938 bp
GC Content 0.55 %
Created at NCBI Nov. 17, 2020





Similar Plasmids

based on Mash distance

NZ_CP115694.1 See Comparison
NZ_CP103671.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
NZ_CP083848.1 See Comparison
CP085738.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_AP022060.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_CP115694.1 See Comparison
NC_021293.2 See Comparison
OW849506.1 See Comparison
NZ_CP103671.1 See Comparison
OW849323.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP083848.1 See Comparison
CP085738.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_CP042538.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_CP115694.1 See Comparison
NZ_AP022060.1 See Comparison
OW849323.1 See Comparison
NZ_CP103671.1 See Comparison
OW849506.1 See Comparison
CP085738.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
AP028552.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP115694.1 See Comparison
AP028568.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_CP103671.1 See Comparison
AP028568.1 See Comparison
OW849506.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP011049.1 See Comparison
OW849323.1 See Comparison
NZ_CP083848.1 See Comparison
CP085738.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
AP028552.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_CP115694.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP042538.1 See Comparison
CP085738.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_CP042528.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022502.1 See Comparison
NZ_AP022472.1 See Comparison
NZ_AP022060.1 See Comparison
NZ_CP115694.1 See Comparison
NZ_CP083848.1 See Comparison
NZ_CP103671.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
NZ_CP073047.1 See Comparison
CP085738.1 See Comparison
NZ_CP083712.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_AP022502.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022472.1 See Comparison
NC_021293.2 See Comparison
NZ_CP115694.1 See Comparison
NZ_AP022060.1 See Comparison
NZ_MT560068.1 See Comparison
NZ_CP083848.1 See Comparison
OW849506.1 See Comparison
OW849323.1 See Comparison
NZ_CP103671.1 See Comparison
NZ_CP083712.1 See Comparison
CP085738.1 See Comparison
NZ_CP073047.1 See Comparison
NZ_CP042543.1 See Comparison
NZ_CP011049.1 See Comparison
NZ_CP010364.1 See Comparison
NZ_CP042569.1 See Comparison
NZ_AP022502.1 See Comparison
AP028568.1 See Comparison
AP028552.1 See Comparison
NZ_CP042538.1 See Comparison
NZ_CP042528.1 See Comparison
NZ_AP022472.1 See Comparison
NC_021293.2 See Comparison
NZ_AP022060.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2