Plasmid CP081140.1

Sequence

Nucleotide Information

Accession CP081140.1
Description Acinetobacter baumannii strain ARLG_6344 plasmid pARLG_6344_1
Source insd
Topology linear
Length 73194 bp
GC Content 0.34 %
Created at NCBI Aug. 26, 2021



Assembly

Genome Data Information

Accession GCA_014881055.2
Assembly Coverage 94


Biosample

Curated Collection Information
Accession 16351130

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.50N;81.62W
Original Query Type coordinates
Coordinates (Lat/Lon) 41.50/-81.62
Address Cleveland Clinic, 9500, Euclid Avenue, Fairfax, Cleveland, Cuyahoga County, Ohio, 44195, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP140421.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP140421.1 See Comparison
CP081140.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2