Plasmid NZ_CP016297.1

Sequence

Nucleotide Information

Accession NZ_CP016297.1
Description Acinetobacter baumannii strain CMC-CR-MDR-Ab4 plasmid pCMCVTAb2-Ab4, complete sequence
Source refseq
Topology circular
Length 74090 bp
GC Content 0.34 %
Created at NCBI Dec. 28, 2016



Assembly

Genome Data Information

Accession GCF_001922205.1
Assembly Coverage 165


Biosample

Curated Collection Information
Accession 4096368

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.2667N;79.9333W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.27/-79.93
Address 789, 6th Street Southeast, Cedar Bluff, Roanoke, Virginia, 24013, United States

ECOSYSTEM
Original Query Homo sapiens,BAL
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 32
Host-associated Sex female

DISEASE
Original Query Pneumococcal septicemia,Rehab,septicemia, necrosis of liver, acute kidney failure, acute respiratory failure, chronic pulmonary heart disease, pulmonary collapse, DVT
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Respiratory failure (DOID:11162 )
    • A lung disease characterized by inadequate gas exchange by the respiratory system.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP014292.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
CP081140.1 See Comparison
NZ_CP140421.1 See Comparison
CP081140.1 See Comparison
CP014292.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
CP081140.1 See Comparison
CP014292.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP140421.1 See Comparison
NZ_CP140421.1 See Comparison
CP014292.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
CP081140.1 See Comparison
NZ_CP035047.1 See Comparison
CP014292.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP026706.1 See Comparison
CP081140.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP140421.1 See Comparison
CP014292.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP026712.1 See Comparison
NZ_CP140421.1 See Comparison
CP081140.1 See Comparison
CP014292.1 See Comparison
NZ_CP016302.1 See Comparison
NZ_CP016297.1 See Comparison
NZ_CP035047.1 See Comparison
NZ_CP035052.1 See Comparison
NZ_CP027121.1 See Comparison
NZ_CP026706.1 See Comparison
NZ_CP140421.1 See Comparison
CP081140.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2