Plasmid CP058047.1

Sequence

Nucleotide Information

Accession CP058047.1
Description Escherichia coli strain RHB03-C05 plasmid pRHB03-C05_2, complete sequence
Source insd
Topology circular
Length 50161 bp
GC Content 0.51 %
Created at NCBI Aug. 7, 2020



Assembly

Genome Data Information

Accession GCA_014109005.1
Assembly Coverage 91.7572


Biosample

Curated Collection Information
Accession 15147975

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP099143.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP099148.1 See Comparison
CP099143.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP099148.1 See Comparison
CP057391.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP099143.1 See Comparison
CP099148.1 See Comparison
CP057385.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP099143.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP099148.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP058053.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP099143.1 See Comparison
CP099148.1 See Comparison
CP057003.1 See Comparison
CP056998.1 See Comparison
CP056992.1 See Comparison
CP099143.1 See Comparison
CP099148.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP058041.1 See Comparison
CP058053.1 See Comparison
CP057391.1 See Comparison
CP057385.1 See Comparison
CP058041.1 See Comparison
CP058047.1 See Comparison
CP099143.1 See Comparison
CP099148.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2