Plasmid NZ_CP058221.1

Sequence

Nucleotide Information

Accession NZ_CP058221.1
Description Escherichia coli strain 83972 plasmid pABU, complete sequence
Source refseq
Topology circular
Length 1566 bp
GC Content 0.51 %
Created at NCBI Jan. 25, 2022



Assembly

Genome Data Information

Accession GCF_021559815.1
Assembly Coverage 122


Biosample

Curated Collection Information
Accession 15325683

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Sweden
Original Query Type name
Coordinates (Lat/Lon) 59.67/14.52
Address Sweden

ECOSYSTEM
Original Query Homo sapiens,pure culture,urine
Classification cell_culture,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP059129.1 See Comparison
NC_017629.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP027128.1 See Comparison
CP056983.1 See Comparison
NZ_CP148347.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP120556.1 See Comparison
CP098954.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP059129.1 See Comparison
NC_017629.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP027128.1 See Comparison
CP056983.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP062217.1 See Comparison
CP098954.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_OW849068.1 See Comparison
NC_017629.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP029109.1 See Comparison
CP056983.1 See Comparison
NZ_CP148347.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
CP098954.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP059129.1 See Comparison
NC_017629.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP062217.1 See Comparison
CP056983.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP063466.1 See Comparison
CP098954.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP058221.1 See Comparison
NC_017629.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP029109.1 See Comparison
CP056983.1 See Comparison
NZ_CP148347.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP063466.1 See Comparison
CP098954.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_OW849068.1 See Comparison
NC_017629.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_CP148347.1 See Comparison
CP056983.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP062217.1 See Comparison
CP098954.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_OW849068.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore