Plasmid CP043022.1

Sequence

Nucleotide Information

Accession CP043022.1
Description Escherichia coli strain 397404_gen plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 5718 bp
GC Content 0.42 %
Created at NCBI Aug. 26, 2019



Assembly

Genome Data Information

Accession GCA_008087645.1
Assembly Coverage 62


Biosample

Curated Collection Information
Accession 12598953

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query haemolytic uraemic syndrome
DOID/SYMP
  • Hemolyticuremic syndrome (DOID:12554 )
    • A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP077345.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP124378.1 See Comparison
CP134926.1 See Comparison
CP056318.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP075707.1 See Comparison
CP077345.1 See Comparison
CP134926.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP124378.1 See Comparison
CP056318.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
CP077345.1 See Comparison
NZ_CP124378.1 See Comparison
CP134926.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_CP054357.1 See Comparison
CP077345.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP054357.1 See Comparison
CP134926.1 See Comparison
NZ_CP124378.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP075707.1 See Comparison
CP134926.1 See Comparison
NZ_CP124378.1 See Comparison
NZ_AP022820.1 See Comparison
CP077345.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP124378.1 See Comparison
CP077345.1 See Comparison
CP134926.1 See Comparison
NZ_CP054357.1 See Comparison
CP056318.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP075707.1 See Comparison
CP043022.1 See Comparison
NZ_CP124378.1 See Comparison
NZ_CP054357.1 See Comparison
CP077345.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_CP082933.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2