PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Typing
Plasmid CP043021.1
Sequence
Nucleotide Information
Accession
CP043021.1
Description
Escherichia coli strain 397404_gen plasmid unnamed2, complete sequence
Source
insd
Topology
circular
Length
5641 bp
GC Content
0.42 %
Created at NCBI
Aug. 26, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_008087645.1
Assembly Coverage
62
Biosample
Curated Collection Information
Accession
12598953
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
Homo sapiens,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
haemolytic uraemic syndrome
DOID/SYMP
Hemolyticuremic syndrome
(
DOID:12554
)
A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
CP043022.1
CP043020.1
Similar Plasmids
based on Mash distance
CP043021.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore