Plasmid NZ_CP124378.1

Sequence

Nucleotide Information

Accession NZ_CP124378.1
Description Escherichia coli strain AVS0578 plasmid pAVS0578-D, complete sequence
Source refseq
Topology circular
Length 5716 bp
GC Content 0.42 %
Created at NCBI May 14, 2023



Assembly

Genome Data Information

Accession GCF_029990415.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 34360983

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland,Kanton Zug
Original Query Type name
Coordinates (Lat/Lon) 47.15/8.55
Address Switzerland,Kanton Zug

ECOSYSTEM
Original Query environmental: river/lake
Classification aquatic,freshwater,river
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP043022.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
CP056318.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_CP075707.1 See Comparison
CP043022.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
CP077345.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP075707.1 See Comparison
CP077345.1 See Comparison
CP043022.1 See Comparison
NZ_AP022820.1 See Comparison
CP056318.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP082933.1 See Comparison
CP043022.1 See Comparison
CP077345.1 See Comparison
CP056318.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP124378.1 See Comparison
CP043022.1 See Comparison
CP077345.1 See Comparison
CP134926.1 See Comparison
CP077345.1 See Comparison
NZ_CP054357.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
CP043022.1 See Comparison
CP134926.1 See Comparison
NZ_CP145146.1 See Comparison
CP056318.1 See Comparison
NZ_AP022820.1 See Comparison
NZ_CP082933.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP075707.1 See Comparison
NZ_CP054357.1 See Comparison
CP077345.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore