Plasmid CP027493.1

Sequence

Nucleotide Information

Accession CP027493.1
Description Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed8
Source insd
Topology linear
Length 2896 bp
GC Content 0.33 %
Created at NCBI March 19, 2018



Assembly

Genome Data Information

Accession GCA_003010475.1
Assembly Coverage 40


Biosample

Curated Collection Information
Accession 8634544

PLASMID INFORMATION
BIOSAMPLE_pathotype MRSA

GEOGRAPHICAL INFORMATION
Original Query 22.8951S;43.2431W
Original Query Type coordinates
Coordinates (Lat/Lon) -22.90/-43.24
Address Hospital Central do Exército, 126, Rua Francisco Manuel, Benfica, Rio de Janeiro, Região Geográfica Imediata do Rio de Janeiro, Região Metropolitana do Rio de Janeiro, Região Geográfica Intermediária do Rio de Janeiro, Rio de Janeiro, Southeast Region, 20911-270, Brazil

ECOSYSTEM
Original Query Homo sapiens,wound fluid,Femural surgical wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 86 y/o
Host-associated Sex female

DISEASE
Original Query Surgical Wound Infection,recovery,post-operative
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2