Plasmid CP027489.1

Suppressed record. Anomalous GC content/Length: Length > 4MB or Length < 1Kbp

Sequence

Nucleotide Information

Accession	CP027489.1
Description	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed4
Source	insd
Topology	linear
Length	655 bp
GC Content	0.37 %
Created at NCBI	March 19, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus aureus (1280)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_aureus (1280)
Strain

Assembly

Genome Data Information

Accession	GCA_003010475.1
Assembly Coverage	40

Biosample

Curated Collection Information

Accession	8634544

PLASMID INFORMATION

BIOSAMPLE_pathotype	MRSA

GEOGRAPHICAL INFORMATION

Original Query	22.8951S;43.2431W
Original Query Type	coordinates
Coordinates (Lat/Lon)	-22.90/-43.24
Address	Hospital Central do Exército, 126, Rua Francisco Manuel, Benfica, Rio de Janeiro, Região Geográfica Imediata do Rio de Janeiro, Região Metropolitana do Rio de Janeiro, Região Geográfica Intermediária do Rio de Janeiro, Rio de Janeiro, Southeast Region, 20911-270, Brazil

ECOSYSTEM

Original Query	Homo sapiens,wound fluid,Femural surgical wound
Classification	host_associated,wound
Host-associated Taxon	Homo sapiens (9606)
Host-associated Age	86 y/o
Host-associated Sex	female

DISEASE

Original Query	Surgical Wound Infection,recovery,post-operative
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP027489.1	See Comparison

Plasmid Visualization

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Source	Element Name	Display	Sequence	Favorite

PGAG	type I restriction-modification system subunit M		copy
PGAG	restriction endonuclease subunit S		copy
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

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biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

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Detected typing markers by plasmidfinder

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2