Plasmid CP151565.1

Sequence

Nucleotide Information

Accession CP151565.1
Description Staphylococcus aureus strain BSN126 plasmid pSa2594-4, complete sequence
Source insd
Topology circular
Length 2896 bp
GC Content 0.33 %
Created at NCBI April 21, 2024



Assembly

Genome Data Information

Accession GCF_038396895.1
Assembly Coverage 97


Biosample

Curated Collection Information
Accession 38637704

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 42.33N;83.05W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.33/-83.05
Address Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 64
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: CP027493.1
    • Description: Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed8
    • Source: insd
    • Created at NCBI: March 19, 2018

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 8634544
  • GEOGRAPHICAL INFORMATION
    • Original Query: 22.8951S;43.2431W
    • Original Query Type: coordinates
    • Address: Hospital Central do Exército, 126, Rua Francisco Manuel, Benfica, Rio de Janeiro, Região Geográfica Imediata do Rio de Janeiro, Região Metropolitana do Rio de Janeiro, Região Geográfica Intermediária do Rio de Janeiro, Rio de Janeiro, Southeast Region, 20911-270, Brazil
    • Coordinates (Lat/Lon): -22.90/-43.24
  • ECOSYSTEM
    • Original Query: Homo sapiens,wound fluid,Femural surgical wound
    • Classification: host_associated,wound
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Surgical Wound Infection,recovery,post-operative
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2