PLSDB - A plasmid database

This resource containes bacterial plasmids retrieved from the NCBI nucleotide database. An overview of the collected plasmids can be used to filter the sequences by various parameters such as length, topology, and taxonomic information. Furthermore, nucleotide sequences can be searched in the database by either using Mash for longer sequences (e.g. contigs or long reads), or by using BLASTn for shorter sequences, e.g. genes.
For more information, please read our updated publication, original publication and visit our FAQ page.

Current status 34513 records

How to cite: Georges P Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller; PLSDB: advancing a comprehensive database of bacterial plasmids, Nucleic Acids Res., 2021 Nov 25, doi: 10.1093/nar/gkab1111
Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller; PLSDB: a resource of complete bacterial plasmids, Nucleic Acids Res., 2018 Oct 31, doi: 10.1093/nar/gky1050

Tested with 92.0.4515.131, 91.02, 14.1.2
What is new?
  • Possibility to download sequence files directly
  • Possibility to compare plasmid/uploaded sequences
  • A new API for developers with more information on our API page
  • New additional annotations included in our complete dataset
  • Minimum spanning tree visualizations