Plasmid OX291689.1
Sequence
Nucleotide Information
| Accession | OX291689.1 |
|---|---|
| Description | Serratia marcescens strain SJC1070 genome assembly, plasmid: 3 |
| Source | insd |
| Topology | circular |
| Length | 12879 bp |
| GC Content | 0.59 % |
| Created at NCBI | Aug. 23, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Serratia marcescens (615) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Yersiniaceae (1903411) |
| Genus | Serratia (613) |
| Species | Serratia_marcescens (615) |
| Strain |
Biosample
Curated Collection Information
| Accession | 28896732 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 54.70/-3.28 |
| Address | United Kingdom |
ECOSYSTEM
| Original Query | Homo sapiens,Bloodstream |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | not known |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: OX291612.1
- Description: Serratia marcescens strain SJC1061 genome assembly, plasmid: 3
- Source: insd
- Created at NCBI: Aug. 23, 2022
-
Host Taxonomy
Assigned Host: Serratia marcescens (615)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Yersiniaceae (1903411)
- Genus : Serratia (613)
- Species : Serratia_marcescens (615)
- Strain:
-
Biosample
Accession: 28896722 - GEOGRAPHICAL INFORMATION
- Original Query: United Kingdom
- Original Query Type: name
- Address: United Kingdom
- Coordinates (Lat/Lon): 54.70/-3.28
- ECOSYSTEM
- Original Query: Homo sapiens,Bloodstream
- Classification: blood,circulatory_system,host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Uncharacterised protein | copy | ||
| PGAG | hin_2 | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | proQ_2 | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterized protein conserved in bacteria | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 12 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| No data available in table | |||||||||
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 0 to 0 of 0 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |