Plasmid OW969943.1

Sequence

Nucleotide Information

Accession OW969943.1
Description Klebsiella pneumoniae isolate 11 genome assembly, plasmid: P5
Source insd
Topology circular
Length 44792 bp
GC Content 0.46 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905337985.2
Assembly Coverage 243


Biosample

Curated Collection Information
Accession 22317002

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Complejo Hospitalario Universitario de A Coruna (A Coruna)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW969943.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaLAP-2copy
amrfinderplusqnrS1copy
PGAGType IV secretion system protein PtlHcopy
PGAGType IV secretion system protein virB10copy
PGAGType IV secretion system protein virB9copy
PGAGType IV secretion system protein virB8copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGType IV secretion system protein virB4copy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 63 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_017624_00009MPF_T3782minus98.462983.4900000000000005e-163524
mate-pair-formationNC_019083_00030MPF_T32294155minus98.7061000630
mate-pair-formationNC_019157_00030MPF_T41644889minus99.5871002.58e-145455
mate-pair-formationNC_019157_00029MPF_T50876139minus1001000645
mate-pair-formationNC_023277_00163MPF_T72019351minus90.23710001337
mate-pair-formationNC_017624_00009MPF_T4377844791minus92.308980598
relaxaseNC_020552_00059MOBP1199213149minus99.4821000754
replicon000221__NC_025130_00012IncX31838819260plus10010001613
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 8 of 8 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2