Plasmid OW959932.1

Sequence

Nucleotide Information

Accession OW959932.1
Description Klebsiella pneumoniae isolate 5000 genome assembly, plasmid: P1
Source insd
Topology circular
Length 212947 bp
GC Content 0.53 %
Created at NCBI May 18, 2022



Assembly

Genome Data Information

Accession GCA_905232735.2
Assembly Coverage 417


Biosample

Curated Collection Information
Accession 22316703

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Marques de Valdecilla (Santander)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124828.1 See Comparison
OW966964.1 See Comparison
OW969820.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967357.1 See Comparison
OW967400.1 See Comparison
OW849366.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
NZ_CP124828.1 See Comparison
OW968024.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW969820.1 See Comparison
OW967357.1 See Comparison
OW966964.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW849366.1 See Comparison
OW968024.1 See Comparison
OW969820.1 See Comparison
NZ_CP124828.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW967357.1 See Comparison
OW966964.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW849366.1 See Comparison
OW969820.1 See Comparison
NZ_CP124828.1 See Comparison
OW966964.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW849366.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW969820.1 See Comparison
OW849240.1 See Comparison
NZ_CP124828.1 See Comparison
OW969739.1 See Comparison
OW959932.1 See Comparison
OW966964.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW849366.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
NZ_CP124828.1 See Comparison
OW849240.1 See Comparison
OW969820.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW966964.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849366.1 See Comparison
OW849240.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore