Plasmid OW849366.1

Sequence

Nucleotide Information

Accession OW849366.1
Description Klebsiella pneumoniae isolate 5000 genome assembly, plasmid: P1
Source insd
Topology circular
Length 212171 bp
GC Content 0.53 %
Created at NCBI May 14, 2022



Assembly

Genome Data Information

Accession GCA_905232795.2
Assembly Coverage 408


Biosample

Curated Collection Information
Accession 22316709

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Marques de Valdecilla (Santander)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW968024.1 See Comparison
OW966964.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW959932.1 See Comparison
NZ_CP124828.1 See Comparison
OW969820.1 See Comparison
OW968024.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW969820.1 See Comparison
NZ_CP124828.1 See Comparison
OW959932.1 See Comparison
OW966964.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW967400.1 See Comparison
OW968024.1 See Comparison
OW849240.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849366.1 See Comparison
OW966964.1 See Comparison
OW967301.1 See Comparison
NZ_CP124828.1 See Comparison
OW969739.1 See Comparison
OW959932.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW969820.1 See Comparison
OW967357.1 See Comparison
OW966964.1 See Comparison
OW848840.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW849240.1 See Comparison
OW969820.1 See Comparison
NZ_CP124828.1 See Comparison
OW959932.1 See Comparison
OW969739.1 See Comparison
OW966964.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967357.1 See Comparison
OW967400.1 See Comparison
OW969820.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
NZ_CP124828.1 See Comparison
OW959932.1 See Comparison
OW966964.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW959932.1 See Comparison
NZ_CP124828.1 See Comparison
OW969730.1 See Comparison
OW969820.1 See Comparison
OW966964.1 See Comparison
OW969739.1 See Comparison
OW968024.1 See Comparison
OW967301.1 See Comparison
OW967400.1 See Comparison
OW967357.1 See Comparison
OW848840.1 See Comparison
OW849240.1 See Comparison
OW969820.1 See Comparison
OW959932.1 See Comparison
OW969739.1 See Comparison
OW969730.1 See Comparison
NZ_CP124828.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiaadA2copy
amrfinderplusqacEdelta1copy
amrfinderpluspcoDcopy
amrfinderpluspcoScopy
amrfinderpluspcoRcopy
amrfinderplusmerTcopy
amrfinderplusmerEcopy
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 256 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.30710001325
repliconCP017721_00179rep_cluster_2183143538144365minus81.928960699
replicon000132__HG969996IncFII144400144634plus99.5741007.44e-118429
mate-pair-formationNC_019155_00032MPF_F159715162558minus99.8959901853
mate-pair-formationNC_019165_00034MPF_F162561163928minus99.7811000842
mate-pair-formationNC_021654_00016MPF_F166728168731minus10010001292
mate-pair-formationNC_019389_00080MPF_F168731169366minus96.6981003.2499999999999997e-135424
mate-pair-formationNC_022609_00081MPF_F169382170371minus95.7581000666
mate-pair-formationNC_014312_00128MPF_F170391171008minus98.544985.21e-121384
mate-pair-formationNC_021502_00131MPF_T171400174036minus96.24610001758
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2