Plasmid NZ_OY725787.1

Sequence

Nucleotide Information

Accession	NZ_OY725787.1
Description	Parabacteroides distasonis strain Parabacteroides distasonis TSDC17.2-1.1 plasmid 42, complete sequence
Source	refseq
Topology	circular
Length	4148 bp
GC Content	0.46 %
Created at NCBI	Sept. 22, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Parabacteroides distasonis (823)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacteroidota (976)
Class	Bacteroidia (200643)
Order	Bacteroidales (171549)
Family	Tannerellaceae (2005525)
Genus	Parabacteroides (375288)
Species	Parabacteroides_distasonis (823)
Strain

Assembly

Genome Data Information

Accession	GCF_963360645.1
Assembly Coverage	90

Biosample

Curated Collection Information

Accession	37507650

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA
Original Query Type	name
Coordinates (Lat/Lon)	39.78/-100.45
Address	USA

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_OY725834.1
NZ_OY725833.1
NZ_OY725832.1
NZ_OY725831.1
NZ_OY725830.1
NZ_OY725829.1
NZ_OY725828.1
NZ_OY725827.1
NZ_OY725826.1
NZ_OY725825.1
NZ_OY725824.1
NZ_OY725823.1
NZ_OY725822.1
NZ_OY725821.1
NZ_OY725820.1
NZ_OY725819.1
NZ_OY725818.1
NZ_OY725817.1
NZ_OY725816.1
NZ_OY725815.1
NZ_OY725814.1
NZ_OY725813.1
NZ_OY725812.1
NZ_OY725811.1
NZ_OY725810.1
NZ_OY725809.1
NZ_OY725808.1
NZ_OY725807.1
NZ_OY725806.1
NZ_OY725805.1
NZ_OY725804.1
NZ_OY725803.1
NZ_OY725802.1
NZ_OY725801.1
NZ_OY725800.1
NZ_OY725799.1
NZ_OY725798.1
NZ_OY725797.1
NZ_OY725796.1
NZ_OY725795.1
NZ_OY725794.1
NZ_OY725793.1
NZ_OY725792.1
NZ_OY725791.1
NZ_OY725790.1
NZ_OY725789.1
NZ_OY725788.1
NZ_OY725785.1
NZ_OY725784.1
NZ_OY725783.1
NZ_OY725782.1
NZ_OY725781.1
NZ_OY725780.1
NZ_OY725779.1
NZ_OY725778.1
NZ_OY725777.1
NZ_OY725776.1
NZ_OY725775.1
NZ_OY725774.1
NZ_OY725773.1
NZ_OY725772.1
NZ_OY725771.1
NZ_OY725770.1
NZ_OY725769.1
NZ_OY725768.1
NZ_OY725767.1
NZ_OY725766.1
NZ_OY725765.1
NZ_OY725764.1
NZ_OY725763.1
NZ_OY725762.1
NZ_OY725761.1
NZ_OY725760.1
NZ_OY725759.1
NZ_OY725758.1
NZ_OY725757.1
NZ_OY725756.1
NZ_OY725755.1
NZ_OY725754.1
NZ_OY725753.1
NZ_OY725752.1
NZ_OY725751.1
NZ_OY725750.1
NZ_OY725749.1
NZ_OY725748.1
NZ_OY725747.1

Similar Plasmids

based on Mash distance

CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_CP143869.1	See Comparison
CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_CP143869.1	See Comparison
CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP143869.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP042284.1	See Comparison
CP103357.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_CP143869.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP143869.1	See Comparison
NZ_CP103380.1	See Comparison
CP103282.1	See Comparison
CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP042284.1	See Comparison
NZ_CP143869.1	See Comparison
CP103255.1	See Comparison
CP103246.1	See Comparison
CP103217.1	See Comparison
CP103201.1	See Comparison
CP103134.1	See Comparison
CP103168.1	See Comparison
CP103156.1	See Comparison
CP103127.1	See Comparison
CP103115.1	See Comparison
CP103106.1	See Comparison
CP103124.1	See Comparison
NZ_CP041398.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_OY725787.1	See Comparison
CP103357.1	See Comparison
NZ_CP103179.1	See Comparison
NZ_CP103273.1	See Comparison
NZ_CP103251.1	See Comparison
NZ_CP103192.1	See Comparison
NZ_CP103241.1	See Comparison
NZ_CP103129.1	See Comparison
CP103287.1	See Comparison
CP103282.1	See Comparison
CP103263.1	See Comparison
CP103270.1	See Comparison
NZ_CP072218.1	See Comparison
NZ_CP041232.1	See Comparison
NZ_CP042283.1	See Comparison
NZ_CP143869.1	See Comparison
NZ_CP103380.1	See Comparison
NZ_CP041398.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP041398.1

Sequence

Accession: NZ_CP041398.1
Description: Bacteroides ovatus strain 3725 D1 iv plasmid unnamed3, complete sequence
Source: refseq
Created at NCBI: July 29, 2019

Host Taxonomy

Assigned Host: Bacteroides ovatus (28116)

Superkingdom : Bacteria (2)
Phylum : Bacteroidota (976)
Class : Bacteroidia (200643)
Order : Bacteroidales (171549)
Family : Bacteroidaceae (815)
Genus : Bacteroides (816)
Species : Bacteroides_ovatus (28116)
Strain:

Biosample

Accession: 12137645

GEOGRAPHICAL INFORMATION

Original Query: USA,Baltimore
Original Query Type: name
Address: USA,Baltimore
Coordinates (Lat/Lon): 39.29/-76.61

ECOSYSTEM

Original Query: Homo sapiens,cell culture
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP041232.1

Sequence

Accession: NZ_CP041232.1
Description: Bacteroides xylanisolvens strain H207 plasmid unnamed2, complete sequence
Source: refseq
Created at NCBI: July 4, 2019

Host Taxonomy

Assigned Host: Bacteroides xylanisolvens (371601)

Superkingdom : Bacteria (2)
Phylum : Bacteroidota (976)
Class : Bacteroidia (200643)
Order : Bacteroidales (171549)
Family : Bacteroidaceae (815)
Genus : Bacteroides (816)
Species : Bacteroides_xylanisolvens (371601)
Strain:

Biosample

Accession: 12137749

GEOGRAPHICAL INFORMATION

Original Query: USA,Seattle
Original Query Type: name
Address: USA,Seattle
Coordinates (Lat/Lon): 47.60/-122.33

ECOSYSTEM

Original Query: Homo sapiens,cell culture
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2