Plasmid CP103168.1

Sequence

Nucleotide Information

Accession CP103168.1
Description Bacteroides caccae strain BFG-474 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 4207 bp
GC Content 0.46 %
Created at NCBI Aug. 29, 2022



Assembly

Genome Data Information

Accession GCF_024759505.1
Assembly Coverage 256


Biosample

Curated Collection Information
Accession 30323379

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Bethesda
Original Query Type name
Coordinates (Lat/Lon) 38.98/-77.09
Address USA,Bethesda

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP072218.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP103380.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103168.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP103380.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_CP103380.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_CP103380.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP103380.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_CP103380.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison
NZ_CP103380.1 See Comparison
NZ_CP042284.1 See Comparison
NZ_CP072218.1 See Comparison
NZ_CP042283.1 See Comparison
NZ_CP041398.1 See Comparison
NZ_CP041232.1 See Comparison
NZ_OY725787.1 See Comparison
NZ_CP103273.1 See Comparison
NZ_CP103251.1 See Comparison
NZ_CP103129.1 See Comparison
CP103287.1 See Comparison
CP103263.1 See Comparison
CP103255.1 See Comparison
CP103156.1 See Comparison
CP103127.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2