Plasmid NZ_OP242303.1

Sequence

Nucleotide Information

Accession	NZ_OP242303.1
Description	Escherichia coli strain LA243 plasmid pLAO98, complete sequence
Source	refseq
Topology	circular
Length	6477 bp
GC Content	0.61 %
Created at NCBI	Feb. 13, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Biosample

Curated Collection Information

Accession	29363371

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	17.962460N;102.613180E
Original Query Type	coordinates
Coordinates (Lat/Lon)	17.96/102.61
Address	Rue Mahosot, Nongchanh, Vientiane Capital, Sisattanak District, Vientiane Prefecture, 01006, Laos

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP090292.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP142411.1	See Comparison
CP044303.1	See Comparison
CP077067.1	See Comparison
NZ_CP121072.1	See Comparison
CP116021.1	See Comparison
CP090292.1	See Comparison
NZ_CP063508.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP075727.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP077433.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP063508.1	See Comparison
NZ_CP142411.1	See Comparison
CP044303.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP075727.1	See Comparison
CP090292.1	See Comparison
CP116021.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP142411.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP063508.1	See Comparison
CP044303.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
CP116021.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP075727.1	See Comparison
CP090292.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP142411.1	See Comparison
NZ_CP063508.1	See Comparison
CP044303.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
NZ_CP075727.1	See Comparison
CP116021.1	See Comparison
NZ_CP110660.1	See Comparison
CP090292.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP142411.1	See Comparison
CP044303.1	See Comparison
NZ_CP063508.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
CP090292.1	See Comparison
CP116021.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP075727.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP148496.1	See Comparison
CP044303.1	See Comparison
NZ_CP142411.1	See Comparison
NZ_CP063508.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
NZ_OP242303.1	See Comparison
CP090292.1	See Comparison
CP116021.1	See Comparison
NZ_CP075727.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP047016.1	See Comparison
NZ_CP077433.1	See Comparison
CP077067.1	See Comparison
NZ_CP148510.1	See Comparison
NZ_CP115317.1	See Comparison
NZ_CP115363.1	See Comparison
NZ_CP148496.1	See Comparison
NZ_CP110660.1	See Comparison
NZ_CP142411.1	See Comparison
CP044303.1	See Comparison
CP116021.1	See Comparison
NZ_CP063508.1	See Comparison
NZ_CP063345.1	See Comparison
NZ_CP121072.1	See Comparison
NZ_CP075727.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP115317.1

Sequence

Accession: NZ_CP115317.1
Description: Escherichia coli strain CUVET18-789 plasmid pCUVET18-789.5, complete sequence
Source: refseq
Created at NCBI: Sept. 3, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 32339855

GEOGRAPHICAL INFORMATION

Original Query: Thailand,Bangkok
Original Query Type: name
Address: Thailand,Bangkok
Coordinates (Lat/Lon): 13.75/100.49

ECOSYSTEM

Original Query: cat,pure culture,urine
Classification: cell_culture,host_associated,urinary_system
Host-associated Taxon:
- Felis catus (9685)

Visualization

NZ_CP110660.1

Sequence

Accession: NZ_CP110660.1
Description: Salmonella enterica subsp. enterica strain S2122 plasmid pS2122_3, complete sequence
Source: refseq
Created at NCBI: Nov. 15, 2022

Host Taxonomy

Assigned Host: Salmonella enterica (59201)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Salmonella (590)
Species : Salmonella_enterica (28901)
Strain:

Biosample

Accession: 31601029

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: stool,Homo sapiens
Classification: fecal,gastrointestinal_system,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP075727.1

Sequence

Accession: NZ_CP075727.1
Description: Escherichia coli strain CPE35 plasmid pE35-IncQ, complete sequence
Source: refseq
Created at NCBI: Aug. 3, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 19296500

GEOGRAPHICAL INFORMATION

Original Query: Thailand,Bangkok
Original Query Type: name
Address: Thailand,Bangkok
Coordinates (Lat/Lon): 13.75/100.49

ECOSYSTEM

Original Query: Sus scrofa,fecal sample,Pig feces
Classification: fecal,gastrointestinal_system,host_associated
Host-associated Taxon:
- Sus scrofa (9823)

Visualization

NZ_CP077433.1

Sequence

Accession: NZ_CP077433.1
Description: Klebsiella aerogenes strain NTT31XS plasmid pNTT31XS-6k, complete sequence
Source: refseq
Created at NCBI: June 29, 2021

Host Taxonomy

Assigned Host: Klebsiella aerogenes (548)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_aerogenes (548)
Strain:

Biosample

Accession: 19778273

GEOGRAPHICAL INFORMATION

Original Query: China,Yangzhou
Original Query Type: name
Address: China,Yangzhou
Coordinates (Lat/Lon): 32.39/119.44

ECOSYSTEM

Original Query: porcine,intestinal contents,intestinal contents
Classification: gastrointestinal_system,host_associated
Host-associated Taxon:
- Sus scrofa (9823)

Visualization

NZ_CP047016.1

Sequence

Accession: NZ_CP047016.1
Description: Escherichia coli strain 19-5 plasmid pQ1, complete sequence
Source: refseq
Created at NCBI: May 12, 2021

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 13563036

GEOGRAPHICAL INFORMATION

Original Query: China,Yangling
Original Query Type: name
Address: China,Yangling
Coordinates (Lat/Lon): 34.27/108.08

ECOSYSTEM

Original Query: swine,whole organism,heart
Classification: circulatory_system,heart,host_associated,liver
Host-associated Taxon:
- Sus scrofa (9823)

Visualization

NZ_CP063345.1

Sequence

Accession: NZ_CP063345.1
Description: Escherichia coli strain BS90R-A plasmid pBS90R-A_4, complete sequence
Source: refseq
Created at NCBI: Feb. 28, 2021

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 16387358

GEOGRAPHICAL INFORMATION

Original Query: Switzerland
Original Query Type: name
Address: Switzerland
Coordinates (Lat/Lon): 46.80/8.23

ECOSYSTEM

Original Query: Homo sapiens,rectal swab
Classification: gastrointestinal_system,host_associated,rectal
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP148510.1

Sequence

Accession: NZ_CP148510.1
Description: Escherichia coli strain Z1323CEC0001 plasmid pZ1323CEC0001-4, complete sequence
Source: refseq
Created at NCBI: April 5, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 40441568

GEOGRAPHICAL INFORMATION

Original Query: South Korea
Original Query Type: name
Address: South Korea
Coordinates (Lat/Lon): 36.56/127.94

ECOSYSTEM

Original Query: Chicken,single cell
Classification: cell_culture,host_associated
Host-associated Taxon:
- Gallus gallus (9031)

Visualization

NZ_CP148496.1

Sequence

Accession: NZ_CP148496.1
Description: Escherichia coli strain Z1323CEC0003 plasmid pZ1323CEC0003-4, complete sequence
Source: refseq
Created at NCBI: April 5, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2