Plasmid NZ_CP121072.1

Sequence

Nucleotide Information

Accession NZ_CP121072.1
Description Salmonella enterica subsp. enterica serovar Infantis strain R22.0044 plasmid pR22.0044_6k, complete sequence
Source refseq
Topology circular
Length 6477 bp
GC Content 0.61 %
Created at NCBI April 6, 2023



Assembly

Genome Data Information

Accession GCF_029591945.1
Assembly Coverage 185


Biosample

Curated Collection Information
Accession 33760342

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan,Taichung City
Original Query Type name
Coordinates (Lat/Lon) 24.17/120.68
Address Taiwan,Taichung City

ECOSYSTEM
Original Query Chicken meat
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP090292.1 See Comparison
NZ_CP077433.1 See Comparison
CP077067.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP148496.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP142411.1 See Comparison
CP044303.1 See Comparison
NZ_CP063345.1 See Comparison
CP116021.1 See Comparison
NZ_OP242303.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP077433.1 See Comparison
NZ_CP075727.1 See Comparison
CP090292.1 See Comparison
CP077067.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_OP242303.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
NZ_CP142411.1 See Comparison
CP044303.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP063345.1 See Comparison
CP090292.1 See Comparison
CP116021.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP075727.1 See Comparison
NZ_CP077433.1 See Comparison
CP077067.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_OP242303.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP142411.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP063345.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
CP044303.1 See Comparison
NZ_CP075727.1 See Comparison
CP116021.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP047016.1 See Comparison
CP090292.1 See Comparison
NZ_CP077433.1 See Comparison
CP077067.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP142411.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP063345.1 See Comparison
CP116021.1 See Comparison
CP044303.1 See Comparison
NZ_OP242303.1 See Comparison
CP090292.1 See Comparison
NZ_CP075727.1 See Comparison
NZ_CP077433.1 See Comparison
CP077067.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_CP142411.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
NZ_CP115363.1 See Comparison
CP044303.1 See Comparison
NZ_OP242303.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP063345.1 See Comparison
CP116021.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP075727.1 See Comparison
NZ_CP077433.1 See Comparison
CP077067.1 See Comparison
CP090292.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
NZ_CP142411.1 See Comparison
CP044303.1 See Comparison
NZ_CP121072.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP063345.1 See Comparison
NZ_CP077433.1 See Comparison
NZ_OP242303.1 See Comparison
CP116021.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP075727.1 See Comparison
CP090292.1 See Comparison
CP077067.1 See Comparison
NZ_CP063508.1 See Comparison
NZ_CP115363.1 See Comparison
NZ_CP115317.1 See Comparison
NZ_CP142411.1 See Comparison
NZ_CP047016.1 See Comparison
NZ_CP148510.1 See Comparison
NZ_CP148496.1 See Comparison
CP044303.1 See Comparison
NZ_CP063345.1 See Comparison
NZ_OP242303.1 See Comparison
CP116021.1 See Comparison
NZ_CP110660.1 See Comparison
NZ_CP075727.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2