Plasmid NZ_OP242281.1

Sequence

Nucleotide Information

Accession NZ_OP242281.1
Description Escherichia coli strain LA130 plasmid pLAO62, complete sequence
Source refseq
Topology circular
Length 51823 bp
GC Content 0.47 %
Created at NCBI Feb. 13, 2023



Biosample

Curated Collection Information
Accession 29363351

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 17.962460N;102.613180E
Original Query Type coordinates
Coordinates (Lat/Lon) 17.96/102.61
Address Rue Mahosot, Nongchanh, Vientiane Capital, Sisattanak District, Vientiane Prefecture, 01006, Laos

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_AP027427.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_OP242281.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_MF678351.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_MF678351.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_AP027427.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_AP027427.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore