Plasmid NZ_CP053213.1

Sequence

Nucleotide Information

Accession NZ_CP053213.1
Description Escherichia coli strain QDFD216 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 50638 bp
GC Content 0.47 %
Created at NCBI April 10, 2021



Assembly

Genome Data Information

Accession GCF_017868515.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14752080

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Changchun,Jilin
Original Query Type name
Coordinates (Lat/Lon) 43.89/125.32
Address China,Changchun,Jilin

ECOSYSTEM
Original Query dog,feces,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP027203.2 See Comparison
NZ_AP027427.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_OP242281.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_OP242281.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_OP242281.1 See Comparison
NZ_CP053213.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_AP027427.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_OP242281.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_AP027427.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_AP027427.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_OP242281.1 See Comparison
NZ_CP027203.2 See Comparison
NZ_MH043625.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_MF678351.1 See Comparison
NZ_MH043626.1 See Comparison
NZ_MF489760.1 See Comparison
NZ_MH043623.1 See Comparison
NZ_MH043625.1 See Comparison
NZ_LC549805.1 See Comparison
NZ_MT449719.1 See Comparison
NZ_MT449718.1 See Comparison
NZ_OP242281.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore