Plasmid NZ_OM001476.1

Sequence

Nucleotide Information

Accession NZ_OM001476.1
Description Escherichia coli strain CR-HvKP3TC-5 plasmid pCR-HvKP3TC-5_Vir, complete sequence
Source refseq
Topology circular
Length 178159 bp
GC Content 0.50 %
Created at NCBI April 5, 2022





Similar Plasmids

based on Mash distance

NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_MW598240.1 See Comparison
NZ_MW598247.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2