Plasmid NZ_CP040540.1

Sequence

Nucleotide Information

Accession NZ_CP040540.1
Description Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-VIR, complete sequence
Source refseq
Topology circular
Length 178154 bp
GC Content 0.50 %
Created at NCBI May 29, 2019



Assembly

Genome Data Information

Accession GCF_005854245.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 9487517

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MF437313.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP040540.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_CP087631.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MF437313.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP102631.1 See Comparison
NZ_OM001478.1 See Comparison
NZ_OM001476.1 See Comparison
NZ_MW598242.1 See Comparison
NZ_MW598231.1 See Comparison
NZ_MW598234.1 See Comparison
NZ_CP040534.1 See Comparison
NZ_CP040546.1 See Comparison
NZ_CP087631.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2