Plasmid NZ_MZ363820.1
Sequence
Nucleotide Information
| Accession | NZ_MZ363820.1 |
|---|---|
| Description | Klebsiella aerogenes strain KA1 plasmid pKA-NDM-5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 43367 bp |
| GC Content | 0.47 % |
| Created at NCBI | July 4, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella aerogenes (548) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_aerogenes (548) |
| Strain |
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_MW242344.1
- Description: Klebsiella aerogenes strain KA3 plasmid pNDM-KA3, complete sequence
- Source: refseq
- Created at NCBI: Aug. 2, 2021
-
Host Taxonomy
Assigned Host: Klebsiella aerogenes (548)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_aerogenes (548)
- Strain:
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaNDM-5 | copy | ||
| amrfinderplus | ble | copy | ||
| PGAG | IS5-like element IS5 family transposase | copy | ||
| PGAG | subclass B1 metallo-beta-lactamase NDM-5 | copy | ||
| PGAG | phosphoribosylanthranilate isomerase | copy | ||
| PGAG | cutA | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | S24 family peptidase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ISL3-like element ISKox3 family transposase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 63 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_023277_00163 | MPF_T | 20309 | 22459 | plus | 90.098 | 100 | 0 | 1335 |
| mate-pair-formation | NC_019157_00029 | MPF_T | 23521 | 24573 | plus | 100 | 100 | 0 | 645 |
| mate-pair-formation | NC_019157_00030 | MPF_T | 24771 | 25496 | plus | 100 | 100 | 1.21e-145 | 456 |
| mate-pair-formation | NC_019083_00030 | MPF_T | 25505 | 26431 | plus | 98.706 | 100 | 0 | 630 |
| mate-pair-formation | NC_017624_00009 | MPF_T | 28878 | 30674 | plus | 95.159 | 98 | 0 | 1123 |
| replicon | 000221__NC_025130_00012 | IncX3 | 10400 | 11272 | minus | 100 | 100 | 0 | 1613 |
| relaxase | NC_020552_00059 | MOBP | 16511 | 17668 | plus | 100 | 100 | 0 | 757 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |