Plasmid NZ_MN612109.1

Sequence

Nucleotide Information

Accession NZ_MN612109.1
Description Staphylococcus pseudintermedius strain G3C4 plasmid pSP-G3C4, complete sequence
Source refseq
Topology circular
Length 4439 bp
GC Content 0.30 %
Created at NCBI June 4, 2020



Biosample

Curated Collection Information
Accession 14228847

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query dog,skin, otitis
Classification disease,host_associated,skin
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP
  • Otitis (SYMP:0000873 )
    • Otitis is a ear symptom characterized as a general term for inflammation or infection of the ear, in both humans and other animals.
  • Auditory system disease (DOID:2742 )
    • A sensory system disease that is characterized by auditory dysfunction located_in the auditory system.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP084438.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
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NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
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NC_013452.1 See Comparison
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NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
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NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
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NZ_CP043387.1 See Comparison
NZ_CP029708.1 See Comparison
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NC_005008.1 See Comparison
NC_001767.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
CP127641.1 See Comparison
CP118827.1 See Comparison
LC784005.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_HG813243.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_CP117243.1 See Comparison
CP016075.1 See Comparison
NC_013452.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NZ_CP043390.1 See Comparison
NC_010262.1 See Comparison
NC_007791.1 See Comparison
NC_006629.2 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP033733.1 See Comparison
NC_005008.1 See Comparison
NC_001767.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP029708.1 See Comparison
NZ_CP132560.1 See Comparison
CP118827.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
CP127641.1 See Comparison
NZ_CP120016.1 See Comparison
LC784005.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP117243.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_HG813243.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
NZ_CP051150.1 See Comparison
CP016075.1 See Comparison
NC_013452.1 See Comparison
NC_010262.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NZ_CP043390.1 See Comparison
NC_007791.1 See Comparison
NC_006629.2 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP132560.1 See Comparison
NC_005008.1 See Comparison
NC_001767.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP029708.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP132558.1 See Comparison
CP127641.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
NZ_CP120104.1 See Comparison
CP118827.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
LC784005.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_CP117243.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP038249.1 See Comparison
CP016075.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_HG813243.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NC_007791.1 See Comparison
NC_013452.1 See Comparison
NC_006629.2 See Comparison
NC_005008.1 See Comparison
NC_010262.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP029708.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NC_001767.1 See Comparison
CP118827.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
CP127641.1 See Comparison
NZ_CP120016.1 See Comparison
LC784005.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP117243.1 See Comparison
NC_013452.1 See Comparison
CP016075.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NC_006629.2 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_HG813243.1 See Comparison
NC_010262.1 See Comparison
NC_007791.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP029708.1 See Comparison
NC_005008.1 See Comparison
NC_001767.1 See Comparison
CP118827.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
CP127641.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
LC784005.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP117243.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP038249.1 See Comparison
CP016075.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
NZ_CP051150.1 See Comparison
NC_013312.1 See Comparison
NZ_HG813243.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NC_013452.1 See Comparison
NZ_CP033733.1 See Comparison
NC_010262.1 See Comparison
NC_007791.1 See Comparison
NC_006629.2 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP029708.1 See Comparison
NC_005008.1 See Comparison
NC_001767.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
LC784005.1 See Comparison
CP127641.1 See Comparison
CP118827.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_CP118840.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_MW364977.1 See Comparison
NC_013312.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094749.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP094762.1 See Comparison
CP016075.1 See Comparison
NZ_CP117243.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_HG813243.1 See Comparison
NC_013452.1 See Comparison
NC_013311.1 See Comparison
NC_013309.1 See Comparison
NC_013307.1 See Comparison
NZ_CP043390.1 See Comparison
NC_010262.1 See Comparison
NC_007791.1 See Comparison
NC_006629.2 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP118804.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
CP127641.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP029708.1 See Comparison
NC_005008.1 See Comparison
NC_001767.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP118779.1 See Comparison
NZ_CP118854.1 See Comparison
NZ_CP118840.1 See Comparison
CP118827.1 See Comparison
NZ_CP120016.1 See Comparison
LC784005.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_MH785255.1 See Comparison
NZ_MH785230.1 See Comparison
NZ_MF445422.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2