Plasmid CP127641.1

Sequence

Nucleotide Information

Accession CP127641.1
Description Staphylococcus aureus strain C236 plasmid pC236_1, complete sequence
Source insd
Topology circular
Length 4439 bp
GC Content 0.30 %
Created at NCBI June 19, 2023



Assembly

Genome Data Information

Accession GCA_030288775.1
Assembly Coverage 54


Biosample

Curated Collection Information

Accession 32360910

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.9285S;138.6007E
Original Query Type coordinates
Coordinates (Lat/Lon) -34.93/138.60
Address Victoria Square, Adelaide, Adelaide City Council, South Australia, 5000, Australia

ECOSYSTEM
Original Query Homo sapiens,Patient Sinus Swab
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Chronic Rhinosinusitis without nasal polyps
DOID/SYMP
  • Rhinitis (DOID:4483 )
  • A upper respiratory infectious disease which involves irritation and inflammation of the mucous membrane of the nose due to viruses, bacteria or irritants. The inflammation results in generation of excessive amounts of mucus leading to runny nose, as well as nasal congestion and post-nasal drip.
  • Sinusitis (DOID:0050127 )
  • A paranasal sinus disease involving inflammation of the paranasal sinuses resulting from bacterial, fungal, viral infection, allergic or autoimmune issues. Symptoms can include fever, weakness, fatigue, cough and congestion. There may also be mucus drainage in the back of the throat, called postnasal drip.

Visualization




Similar Plasmids

based on Mash distance

NZ_CP054447.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
CP016075.1 See Comparison
NZ_CP051150.1 See Comparison
NC_007791.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP136530.1 See Comparison
CP118827.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
LC784005.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP043390.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
CP016075.1 See Comparison
NC_007791.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
LC784005.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
CP118827.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_MN612109.1 See Comparison
CP016075.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_CP132558.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_007791.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP132560.1 See Comparison
LC784005.1 See Comparison
CP127641.1 See Comparison
CP118827.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
CP016075.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_CP043387.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_007791.1 See Comparison
LC784005.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
CP118827.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_CP043390.1 See Comparison
CP016075.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_007791.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP120016.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
CP118827.1 See Comparison
LC784005.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_MW364977.1 See Comparison
NZ_CP084438.1 See Comparison
NC_007791.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
CP016075.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NZ_CP051150.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP132560.1 See Comparison
CP118827.1 See Comparison
NZ_CP120016.1 See Comparison
LC784005.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_MN612109.1 See Comparison
NZ_CP054447.1 See Comparison
NZ_CP120104.1 See Comparison
NZ_MF445422.1 See Comparison
NZ_MW364977.1 See Comparison
CP016075.1 See Comparison
NZ_CP038249.1 See Comparison
NZ_CP084438.1 See Comparison
NZ_CP095114.1 See Comparison
NZ_CP094730.1 See Comparison
NZ_CP094735.1 See Comparison
NZ_CP094716.1 See Comparison
NZ_CP094699.1 See Comparison
NZ_CP051150.1 See Comparison
NC_013312.1 See Comparison
NC_013311.1 See Comparison
NC_007791.1 See Comparison
NZ_CP043390.1 See Comparison
NZ_CP043393.1 See Comparison
NZ_CP043387.1 See Comparison
NZ_CP033733.1 See Comparison
NZ_AP019722.1 See Comparison
NZ_CP035290.1 See Comparison
NZ_CP132558.1 See Comparison
NZ_CP136526.1 See Comparison
NZ_CP136530.1 See Comparison
NZ_CP132560.1 See Comparison
NZ_CP120003.1 See Comparison
NZ_CP120016.1 See Comparison
CP118827.1 See Comparison
LC784005.1 See Comparison
NZ_CP120013.1 See Comparison
NZ_CP120006.1 See Comparison
NZ_CP120104.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2