Plasmid NZ_MN158990.1

Sequence

Nucleotide Information

Accession NZ_MN158990.1
Description Escherichia coli strain TREC4 plasmid pTREC4, complete sequence
Source refseq
Topology circular
Length 168775 bp
GC Content 0.52 %
Created at NCBI Aug. 4, 2020





Similar Plasmids

based on Mash distance

CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116995.1 See Comparison
CP125035.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116995.1 See Comparison
CP125035.1 See Comparison
CP124971.1 See Comparison
CP056787.1 See Comparison
CP124977.1 See Comparison
NZ_CP009232.1 See Comparison
CP125035.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP116995.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP027130.1 See Comparison
CP124977.1 See Comparison
CP124971.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP116995.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP021880.1 See Comparison
CP125035.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP116995.1 See Comparison
CP125035.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_CP009232.1 See Comparison
CP056787.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116995.1 See Comparison
CP125035.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore