Plasmid NZ_CP059120.1

Sequence

Nucleotide Information

Accession NZ_CP059120.1
Description Escherichia coli strain Ec42 plasmid pEc42_1, complete sequence
Source refseq
Topology circular
Length 171769 bp
GC Content 0.51 %
Created at NCBI July 28, 2021



Assembly

Genome Data Information

Accession GCF_019355455.1
Assembly Coverage 1300


Biosample

Curated Collection Information
Accession 15486687

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ghana
Original Query Type name
Coordinates (Lat/Lon) 8.03/-1.08
Address Ghana

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP125044.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_CP116995.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP059120.1 See Comparison
NZ_CP116995.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP027130.1 See Comparison
CP125044.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_MT077880.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103571.1 See Comparison
CP125044.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP021880.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
CP056787.1 See Comparison
NZ_CP116995.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP027130.1 See Comparison
CP125044.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116995.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP103705.1 See Comparison
CP125044.1 See Comparison
NZ_CP116995.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP027130.1 See Comparison
CP124977.1 See Comparison
CP124971.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP027130.1 See Comparison
CP125044.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_MT077880.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP116995.1 See Comparison
CP056787.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_MT077880.1 See Comparison
CP125044.1 See Comparison
CP124971.1 See Comparison
CP124977.1 See Comparison
NZ_CP009232.1 See Comparison
NZ_CP116995.1 See Comparison
CP056787.1 See Comparison
NZ_MT077881.1 See Comparison
NZ_MN158990.1 See Comparison
NZ_CP027130.1 See Comparison
NZ_CP103571.1 See Comparison
NZ_CP084902.1 See Comparison
NZ_CP021880.1 See Comparison
NZ_CP116988.1 See Comparison
NZ_CP103516.1 See Comparison
NZ_CP103705.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2