Plasmid NZ_MH090916.1

Sequence

Nucleotide Information

Accession NZ_MH090916.1
Description Staphylococcus epidermidis strain 25S plasmid pLF25, complete sequence
Source refseq
Topology circular
Length 4397 bp
GC Content 0.32 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14228258

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Czech Republic
Original Query Type name
Coordinates (Lat/Lon) 49.82/15.47
Address Czech Republic

ECOSYSTEM
Original Query animal farm, personnel throat
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP131656.1 See Comparison
CP124588.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
CP124588.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NC_012000.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_CP120159.1 See Comparison
CP124588.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP028191.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
CP124588.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014391.1 See Comparison
CP124588.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP014375.1 See Comparison
CP124588.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
CP124588.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2