Plasmid NZ_CP014375.1

Sequence

Nucleotide Information

Accession NZ_CP014375.1
Description Staphylococcus aureus strain USA300-SUR4 plasmid pUSA06-1-SUR4, complete sequence
Source refseq
Topology circular
Length 4397 bp
GC Content 0.32 %
Created at NCBI Oct. 4, 2018



Assembly

Genome Data Information

Accession GCF_003595425.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 4497598

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 5.866667N;55.166667W
Original Query Type coordinates
Coordinates (Lat/Lon) 5.87/-55.17
Address Nieuwe Charlesburgweg, Rainville, Paramaribo, Suriname

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP119111.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
CP124588.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP131656.1 See Comparison
NC_012000.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP076841.1 See Comparison
CP124588.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NC_012000.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_CP028191.1 See Comparison
CP124588.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014391.1 See Comparison
NC_012000.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
CP124588.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NC_012000.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP028191.1 See Comparison
CP124588.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP014401.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP014375.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP014380.1 See Comparison
NC_012000.1 See Comparison
NZ_CP120159.1 See Comparison
NZ_CP131656.1 See Comparison
CP124588.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison
NZ_CP096524.1 See Comparison
NZ_CP119111.1 See Comparison
NZ_CP118985.1 See Comparison
NZ_CP014391.1 See Comparison
NZ_CP076844.1 See Comparison
NZ_CP076841.1 See Comparison
NZ_CP014396.1 See Comparison
NZ_CP014406.1 See Comparison
NZ_CP014401.1 See Comparison
NC_012000.1 See Comparison
NZ_CP094700.1 See Comparison
NZ_CP073064.1 See Comparison
NZ_CP014380.1 See Comparison
NZ_CP120159.1 See Comparison
CP124588.1 See Comparison
NZ_CP028191.1 See Comparison
NZ_CP131656.1 See Comparison
NZ_MH090916.1 See Comparison
NZ_MH785228.1 See Comparison
NZ_MH785256.1 See Comparison
NZ_MW364976.1 See Comparison


Identical Plasmids

100% Sequence Identity






Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2