Plasmid NZ_MG299141.1

Sequence

Nucleotide Information

Accession NZ_MG299141.1
Description Shigella sonnei strain SH276-2 plasmid pSH276-2, complete sequence
Source refseq
Topology circular
Length 109845 bp
GC Content 0.53 %
Created at NCBI May 18, 2020



Biosample

Curated Collection Information
Accession 14228478

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 24.5N;108.26E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.50/108.26
Address Dushan, Yizhou District, Hechi, Guangxi, China

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP088777.1 See Comparison
CP088412.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP099769.1 See Comparison
CP088777.1 See Comparison
CP088412.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_CP099769.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
CP088777.1 See Comparison
CP088412.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_CP099769.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299141.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
NZ_CP099769.1 See Comparison
CP088777.1 See Comparison
CP088412.1 See Comparison
CP088777.1 See Comparison
CP088412.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_CP099769.1 See Comparison
CP088777.1 See Comparison
NZ_CP151350.1 See Comparison
NZ_CP151335.1 See Comparison
NZ_CP151385.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
NZ_CP099769.1 See Comparison
NZ_MG299133.1 See Comparison
NZ_MG299145.1 See Comparison
NZ_MG299131.1 See Comparison
NZ_MG299137.1 See Comparison
NZ_MG299151.1 See Comparison
NZ_MG299147.1 See Comparison
NZ_MG299139.1 See Comparison
NZ_MG299149.1 See Comparison
NZ_MG299135.1 See Comparison
NZ_MG299128.1 See Comparison
NZ_MG299153.1 See Comparison
NZ_MG299130.1 See Comparison
NZ_MG299143.1 See Comparison
CP088412.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore