Plasmid CP088777.1

Sequence

Nucleotide Information

Accession	CP088777.1
Description	Escherichia coli strain B16EC0725 plasmid pB16EC0725-1, complete sequence
Source	insd
Topology	circular
Length	106218 bp
GC Content	0.53 %
Created at NCBI	Dec. 9, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_021132975.1
Assembly Coverage	165

Biosample

Curated Collection Information

Accession	23391567

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	37.68N;126.77E
Original Query Type	coordinates
Coordinates (Lat/Lon)	37.68/126.77
Address	Gyeongui-ro, Daehwa-dong, 일산3동, Ilsanseo-gu, Goyang-si, 10374, South Korea

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Bloodstream infection
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

CP088778.1

Similar Plasmids

based on Mash distance

NZ_CP151350.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
NZ_AP022296.1	See Comparison
NZ_CP099769.1	See Comparison
NZ_AP022296.1	See Comparison
CP088412.1	See Comparison
NZ_CP151350.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
CP088412.1	See Comparison
NZ_CP099769.1	See Comparison
NZ_AP022296.1	See Comparison
NZ_CP151350.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
NZ_CP151350.1	See Comparison
NZ_CP099769.1	See Comparison
CP088412.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_CP099769.1	See Comparison
NZ_AP022296.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
NZ_CP099769.1	See Comparison
NZ_AP022296.1	See Comparison
CP088412.1	See Comparison
NZ_CP151350.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
CP088412.1	See Comparison
NZ_MG299133.1	See Comparison
NZ_CP151350.1	See Comparison
NZ_CP151393.1	See Comparison
NZ_CP151302.1	See Comparison
NZ_CP151335.1	See Comparison
NZ_CP151373.1	See Comparison
NZ_KY471629.1	See Comparison
NZ_MG299145.1	See Comparison
NZ_MG299131.1	See Comparison
NZ_KY471628.1	See Comparison
NZ_MG299137.1	See Comparison
NZ_MG299151.1	See Comparison
NZ_MG299147.1	See Comparison
NZ_MG299139.1	See Comparison
NZ_MG299149.1	See Comparison
NZ_MG299141.1	See Comparison
NZ_MG299135.1	See Comparison
NZ_MG299128.1	See Comparison
NZ_MG299153.1	See Comparison
NZ_MG299130.1	See Comparison
NZ_MG299143.1	See Comparison
NZ_CP099769.1	See Comparison
NZ_AP022296.1	See Comparison
CP088777.1	See Comparison
CP088412.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore