Plasmid NZ_LT985298.1

Sequence

Nucleotide Information

Accession NZ_LT985298.1
Description Escherichia coli strain ECOR 18 plasmid RCS87_p, complete sequence
Source refseq
Topology circular
Length 6047 bp
GC Content 0.54 %
Created at NCBI March 15, 2018



Biosample

Curated Collection Information
Accession 8722131

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP061365.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117314.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore