Plasmid NZ_CP038387.1

Sequence

Nucleotide Information

Accession NZ_CP038387.1
Description Escherichia coli O55:H7 strain DEC5D plasmid pDEC5D-2, complete sequence
Source refseq
Topology circular
Length 6069 bp
GC Content 0.54 %
Created at NCBI May 28, 2020



Assembly

Genome Data Information

Accession GCF_013167975.1
Assembly Coverage 307


Biosample

Curated Collection Information
Accession 11229485

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query Sri Lanka
Original Query Type name
Coordinates (Lat/Lon) 41.15/1.08
Address Sri Lanka

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP038387.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP117303.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison
NZ_LT985298.1 See Comparison
NZ_LT985307.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP060426.1 See Comparison
NZ_CP124812.1 See Comparison
NZ_CP124818.1 See Comparison
NZ_CP117309.1 See Comparison
NZ_CP117320.1 See Comparison
NZ_CP117314.1 See Comparison
NZ_CP061365.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore