Plasmid NZ_LR890330.1

Sequence

Nucleotide Information

Accession NZ_LR890330.1
Description Escherichia coli strain MINF_1A isolate MINF_1A plasmid 5, complete sequence
Source refseq
Topology circular
Length 6760 bp
GC Content 0.46 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904863375.1
Assembly Coverage 122


Biosample

Curated Collection Information
Accession 4089379

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,swab
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP033225.2 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_CP149255.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP117598.1 See Comparison
CP091403.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_OP242315.1 See Comparison
CP088614.1 See Comparison
NZ_CP025235.1 See Comparison
CP057679.1 See Comparison
NZ_CP149255.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_OP242315.1 See Comparison
CP088614.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_CP117598.1 See Comparison
CP091403.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_LR890330.1 See Comparison
NZ_CP117598.1 See Comparison
NZ_OP242315.1 See Comparison
CP088614.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_CP037878.1 See Comparison
CP091403.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_CP037878.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_CP025235.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_CP117598.1 See Comparison
NZ_OP242315.1 See Comparison
CP091403.1 See Comparison
CP088614.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_CP117598.1 See Comparison
NZ_OP242315.1 See Comparison
CP088614.1 See Comparison
CP091403.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_CP149255.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
CP091403.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_CP117598.1 See Comparison
NZ_OP242315.1 See Comparison
NZ_CP117598.1 See Comparison
CP088614.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_CP033225.2 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP149255.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_OP242315.1 See Comparison
CP091403.1 See Comparison
CP088614.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2