Plasmid NZ_CP037878.1

Sequence

Nucleotide Information

Accession NZ_CP037878.1
Description Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014863 plasmid pPNCS014863_S1, complete sequence
Source refseq
Topology circular
Length 6760 bp
GC Content 0.46 %
Created at NCBI Dec. 19, 2019



Assembly

Genome Data Information

Accession GCF_009756585.1
Assembly Coverage 58


Biosample

Curated Collection Information
Accession 10953954

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 49.28N;123.12W
Original Query Type coordinates
Coordinates (Lat/Lon) 49.28/-123.12
Address Daily Body Care, 872, Seymour Street, Yaletown, Downtown, Vancouver, Metro Vancouver Regional District, British Columbia, V6B, Canada

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 47 Years
Host-associated Sex male

DISEASE
Original Query salmonellosis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_LR890330.1 See Comparison
NZ_CP039594.1 See Comparison
CP088614.1 See Comparison
NZ_MG948564.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_MT507881.1 See Comparison
CP088614.1 See Comparison
NZ_LR890330.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_LR890330.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_MT507881.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
CP088614.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_MT507881.1 See Comparison
CP088614.1 See Comparison
NZ_CP039594.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_LR890330.1 See Comparison
NZ_CP149255.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_LR890330.1 See Comparison
CP088614.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_CP037878.1 See Comparison
NZ_MT507881.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
NZ_MT507881.1 See Comparison
CP057679.1 See Comparison
NZ_MG948564.1 See Comparison
CP057227.1 See Comparison
NZ_LR890330.1 See Comparison
CP088614.1 See Comparison
NZ_CP039594.1 See Comparison
NZ_CP025235.1 See Comparison
CP057679.1 See Comparison
CP057227.1 See Comparison
NZ_CP149255.1 See Comparison
NZ_MG948564.1 See Comparison
NZ_MT507881.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore