Plasmid NZ_LR135397.1

Sequence

Nucleotide Information

Accession NZ_LR135397.1
Description Enterococcus faecium isolate E8290 plasmid 4
Source refseq
Topology linear
Length 9317 bp
GC Content 0.31 %
Created at NCBI Jan. 2, 2019



Assembly

Genome Data Information

Accession GCF_900639605.1
Assembly Coverage 73


Biosample

Curated Collection Information
Accession 10007559

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OP378673.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_CP023427.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore