Plasmid NZ_CP023427.1

Sequence

Nucleotide Information

Accession NZ_CP023427.1
Description Enterococcus faecium strain K60-39 plasmid pTT39_p4
Source refseq
Topology linear
Length 10105 bp
GC Content 0.31 %
Created at NCBI Sept. 23, 2017



Assembly

Genome Data Information

Accession GCF_002334625.1
Assembly Coverage 256


Biosample

Curated Collection Information
Accession 7638053

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 69.6492N;18.9553E
Original Query Type coordinates
Coordinates (Lat/Lon) 69.65/18.96
Address Chasing Lights, Storgata, Nerstranda, Sørbyen, Tromsø, Troms og Finnmark, 9008, Norway

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_CP023427.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_LR135291.1 See Comparison
NZ_CP064429.1 See Comparison
NZ_LR135250.1 See Comparison
NZ_LR135262.1 See Comparison
NZ_LR135201.1 See Comparison
NZ_LR135208.1 See Comparison
NZ_LR135432.1 See Comparison
NZ_LR135404.1 See Comparison
NZ_LR135397.1 See Comparison
NZ_LR135411.1 See Comparison
NZ_OP378673.1 See Comparison
NZ_CP065933.1 See Comparison
NZ_CP064429.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore