Plasmid NZ_KY659387.1

Sequence

Nucleotide Information

Accession	NZ_KY659387.1
Description	Citrobacter freundii strain 30 plasmid pCfr-30, complete sequence
Source	refseq
Topology	circular
Length	53292 bp
GC Content	0.50 %
Created at NCBI	June 3, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter freundii (546)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_freundii (546)
Strain

Biosample

Curated Collection Information

Accession	14227869

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP117736.1	See Comparison
CP067928.1	See Comparison
NZ_CP083703.1	See Comparison
CP080663.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
CP080714.1	See Comparison
CP080728.1	See Comparison
CP080724.1	See Comparison
CP080700.1	See Comparison
CP080740.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
CP080676.1	See Comparison
CP080659.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080672.1	See Comparison
NC_019384.1	See Comparison
NZ_KU934011.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_CP147630.1	See Comparison
NZ_KT362706.1	See Comparison
CP067928.1	See Comparison
NZ_CP117736.1	See Comparison
CP080663.1	See Comparison
NZ_CP083703.1	See Comparison
CP080714.1	See Comparison
CP080728.1	See Comparison
CP080724.1	See Comparison
CP080700.1	See Comparison
CP080740.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
CP080676.1	See Comparison
CP080659.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080672.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
NZ_KU934011.1	See Comparison
NC_019384.1	See Comparison
NZ_CP147630.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_KT362706.1	See Comparison
NZ_CP147630.1	See Comparison
CP067928.1	See Comparison
NZ_CP083703.1	See Comparison
CP080724.1	See Comparison
CP080700.1	See Comparison
CP080740.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
CP080676.1	See Comparison
CP080659.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080672.1	See Comparison
NC_019384.1	See Comparison
NZ_CP117736.1	See Comparison
CP080663.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
CP080714.1	See Comparison
CP080728.1	See Comparison
NZ_KY659387.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_KT362706.1	See Comparison
NZ_KU934011.1	See Comparison
CP067928.1	See Comparison
NZ_CP117736.1	See Comparison
NZ_KU934011.1	See Comparison
NZ_CP083703.1	See Comparison
CP080728.1	See Comparison
CP080724.1	See Comparison
CP080700.1	See Comparison
CP080740.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
CP080676.1	See Comparison
CP080659.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080672.1	See Comparison
NZ_CP147630.1	See Comparison
CP080663.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
CP080714.1	See Comparison
NC_019384.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_CP083703.1	See Comparison
NZ_KT362706.1	See Comparison
NZ_CP117736.1	See Comparison
CP067928.1	See Comparison
CP080676.1	See Comparison
CP080663.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
CP080714.1	See Comparison
CP080728.1	See Comparison
CP080659.1	See Comparison
CP080724.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080700.1	See Comparison
CP080672.1	See Comparison
CP080740.1	See Comparison
NZ_KT362706.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
NC_019384.1	See Comparison
NZ_CP147630.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_CP117736.1	See Comparison
NZ_KU934011.1	See Comparison
NZ_CP083703.1	See Comparison
CP067928.1	See Comparison
CP080663.1	See Comparison
CP080686.1	See Comparison
CP080668.1	See Comparison
CP080672.1	See Comparison
CP080754.1	See Comparison
CP080732.1	See Comparison
CP080714.1	See Comparison
CP080728.1	See Comparison
CP080724.1	See Comparison
CP080700.1	See Comparison
CP080740.1	See Comparison
CP080747.1	See Comparison
CP080709.1	See Comparison
CP080695.1	See Comparison
CP080736.1	See Comparison
CP080680.1	See Comparison
CP080705.1	See Comparison
CP080676.1	See Comparison
CP080659.1	See Comparison
NZ_KU934011.1	See Comparison
NC_019384.1	See Comparison
NZ_KY659388.1	See Comparison
NZ_CP147630.1	See Comparison
NZ_KT362706.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore