Plasmid NZ_KX011076.1

Sequence

Nucleotide Information

Accession	NZ_KX011076.1
Description	Staphylococcus aureus strain SA7112 plasmid pSA7112-1, complete sequence
Source	refseq
Topology	circular
Length	2366 bp
GC Content	0.31 %
Created at NCBI	June 3, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus aureus (1280)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_aureus (1280)
Strain

Biosample

Curated Collection Information

Accession	14227181

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Brazil
Original Query Type	name
Coordinates (Lat/Lon)	-10.33/-53.20
Address	Brazil

ECOSYSTEM

Original Query	Skin swab
Classification	host_associated
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP065198.1	See Comparison
NZ_CP119114.1	See Comparison
CP113402.1	See Comparison
CP113398.1	See Comparison
CP102662.1	See Comparison
NZ_CP013617.1	See Comparison
NZ_LT571451.1	See Comparison
NC_019143.1	See Comparison
NZ_CP033816.1	See Comparison
NC_013305.1	See Comparison
NC_007170.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP069478.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP069950.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
CP102662.1	See Comparison
NZ_CP065198.1	See Comparison
NZ_CP119114.1	See Comparison
CP113402.1	See Comparison
CP113398.1	See Comparison
NZ_LT571451.1	See Comparison
NC_013305.1	See Comparison
NZ_CP013617.1	See Comparison
NC_019143.1	See Comparison
NC_007170.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP033816.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP069478.1	See Comparison
NZ_CP069950.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP065198.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
CP113402.1	See Comparison
NZ_CP119114.1	See Comparison
CP113398.1	See Comparison
NZ_CP013617.1	See Comparison
CP102662.1	See Comparison
NZ_LT571451.1	See Comparison
NZ_CP013617.1	See Comparison
NZ_CP065198.1	See Comparison
CP113402.1	See Comparison
CP113398.1	See Comparison
NC_019143.1	See Comparison
NC_013305.1	See Comparison
NC_007170.1	See Comparison
NZ_CP033816.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP069950.1	See Comparison
NZ_CP069478.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
NZ_CP119114.1	See Comparison
CP102662.1	See Comparison
NZ_LT571451.1	See Comparison
NC_013305.1	See Comparison
NC_019143.1	See Comparison
NC_007170.1	See Comparison
NZ_CP033816.1	See Comparison
NZ_CP069478.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP069950.1	See Comparison
CP052996.1	See Comparison
CP052950.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP113402.1	See Comparison
NZ_CP065198.1	See Comparison
NZ_CP119114.1	See Comparison
CP113398.1	See Comparison
NZ_CP013617.1	See Comparison
CP102662.1	See Comparison
NZ_LT571451.1	See Comparison
NC_013305.1	See Comparison
NC_019143.1	See Comparison
NC_007170.1	See Comparison
NZ_CP033816.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP069478.1	See Comparison
NZ_CP069950.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
NZ_CP119114.1	See Comparison
NZ_CP065198.1	See Comparison
CP113402.1	See Comparison
CP113398.1	See Comparison
NZ_LT571451.1	See Comparison
CP102662.1	See Comparison
NZ_CP013617.1	See Comparison
NC_019143.1	See Comparison
NC_013305.1	See Comparison
NZ_CP033783.1	See Comparison
NC_007170.1	See Comparison
NZ_CP033816.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP133665.1	See Comparison
NZ_CP131673.1	See Comparison
CP102662.1	See Comparison
NZ_CP069950.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
NZ_KX011076.1	See Comparison
NZ_CP069478.1	See Comparison
NZ_CP065198.1	See Comparison
NZ_CP119114.1	See Comparison
CP113402.1	See Comparison
CP113398.1	See Comparison
NZ_LT571451.1	See Comparison
NC_019143.1	See Comparison
NZ_CP013617.1	See Comparison
NZ_CP033816.1	See Comparison
NC_013305.1	See Comparison
NC_007170.1	See Comparison
NZ_CP039165.1	See Comparison
NZ_CP033783.1	See Comparison
NZ_CP025398.1	See Comparison
NZ_CP131673.1	See Comparison
NZ_CP069950.1	See Comparison
NZ_CP069478.1	See Comparison
CP052996.1	See Comparison
CP052983.1	See Comparison
CP052961.1	See Comparison
CP052950.1	See Comparison
NZ_CP133665.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2